Non-Coding RNA Search

rton1240b_p16.y1

Sequence:


               
               GCTGTTCAGCAGCATTGATGGGCATCCACTGACAATTTGGAAACGGAGAAACTCTGCGAC
TACTTCTCAGAACACCTGGTGTGTCTACCGGCCTGTGCTGGCTGCGCTGGAGTCGCTGAA
CTGTGCAGTGCTCGCTGCCATGGACACCACCAAGCTGGAATATGAGCGGGCCTCCAAAGT
GGACCAGTTTGTGACACGTTTCCTACTGCGGGAGACGGTGAGCCAGCTCCAAGCCCTGCA
GAGCTCACTGGAGGGGGCGTCAGATACCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGTTCAGCAGCATTGATGGGCATCCACTGACAATTTGGAAACGGAGAAACTCTGCGAC
TACTTCTCAGAACACCTGGTGTGTCTACCGGCCTGTGCTGGCTGCGCTGGAGTCGCTGAA
CTGTGCAGTGCTCGCTGCCATGGACACCACCAAGCTGGAATATGAGCGGGCCTCCAAAGT
GGACCAGTTTGTGACACGTTTCCTACTGCGGGAGACGGTGAGCCAGCTCCAAGCCCTGCA
GAGCTCACTGGAGGGGGCGTCAGATACCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10435716|dbj|BAB14649.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10435716|dbj|BAB14649.1|

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               157-267, gnl|bosTau2|chr13 (48308712-48308822)
               

               
               157-267, gnl|canFam2|chr24 (25853288-25853442)
               

               
               157-267, gnl|danRer3|chr21 (20945486-20945337)
               

               
               157-267, gnl|dasNov1|scaffold_5549 (37116-36959)
               

               
               157-267, gnl|echTel1|scaffold_242100 (771-926)
               

               
               157-267, gnl|fr1|chrUn (29391020-29390892)
               

               
               157-267, gnl|hg17|chr20 (31711713-31711868)
               

               
               157-267, gnl|Hg17|chr20 (31711863-31711753)
               

               
               157-267, gnl|loxAfr1|scaffold_11298 (28192-28347)
               

               
               157-267, gnl|mm7|chr2 (154288270-154288425)
               

               
               157-267, gnl|Mm7|chr2 (154288420-154288310)
               

               
               157-267, gnl|monDom2|scaffold_6 (13422732-13422580)
               

               
               157-267, gnl|oryCun1|scaffold_197467 (12405-12557)
               

               
               157-267, gnl|panTro1|chr21 (33687662-33687817)
               

               
               157-267, gnl|rheMac2|chr10 (30941599-30941444)
               

               
               157-267, gnl|rn3|chr3 (144926037-144926184)
               

               
               157-267, gnl|tetNig1|chr11 (3329110-3329232)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               157-267, gnl|bosTau2|chr13 (48308712-48308822)
               

               
               157-267, gnl|canFam2|chr24 (25853288-25853442)
               

               
               157-267, gnl|danRer3|chr21 (20945486-20945337)
               

               
               157-267, gnl|dasNov1|scaffold_5549 (37116-36959)
               

               
               157-267, gnl|echTel1|scaffold_242100 (771-926)
               

               
               157-267, gnl|fr1|chrUn (29391020-29390892)
               

               
               157-267, gnl|hg17|chr20 (31711713-31711868)
               

               
               157-267, gnl|Hg17|chr20 (31711863-31711753)
               

               
               157-267, gnl|loxAfr1|scaffold_11298 (28192-28347)
               

               
               157-267, gnl|mm7|chr2 (154288270-154288425)
               

               
               157-267, gnl|Mm7|chr2 (154288420-154288310)
               

               
               157-267, gnl|monDom2|scaffold_6 (13422732-13422580)
               

               
               157-267, gnl|oryCun1|scaffold_197467 (12405-12557)
               

               
               157-267, gnl|panTro1|chr21 (33687662-33687817)
               

               
               157-267, gnl|rheMac2|chr10 (30941599-30941444)
               

               
               157-267, gnl|rn3|chr3 (144926037-144926184)
               

               
               157-267, gnl|tetNig1|chr11 (3329110-3329232)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ton (0.1755)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)

	157-267, gnl\|bosTau2\|chr13 (48308712-48308822)
	157-267, gnl\|canFam2\|chr24 (25853288-25853442)
	157-267, gnl\|danRer3\|chr21 (20945486-20945337)
	157-267, gnl\|dasNov1\|scaffold_5549 (37116-36959)
	157-267, gnl\|echTel1\|scaffold_242100 (771-926)
	157-267, gnl\|fr1\|chrUn (29391020-29390892)
	157-267, gnl\|hg17\|chr20 (31711713-31711868)
	157-267, gnl\|Hg17\|chr20 (31711863-31711753)
	157-267, gnl\|loxAfr1\|scaffold_11298 (28192-28347)
	157-267, gnl\|mm7\|chr2 (154288270-154288425)
	157-267, gnl\|Mm7\|chr2 (154288420-154288310)
	157-267, gnl\|monDom2\|scaffold_6 (13422732-13422580)
	157-267, gnl\|oryCun1\|scaffold_197467 (12405-12557)
	157-267, gnl\|panTro1\|chr21 (33687662-33687817)
	157-267, gnl\|rheMac2\|chr10 (30941599-30941444)
	157-267, gnl\|rn3\|chr3 (144926037-144926184)
	157-267, gnl\|tetNig1\|chr11 (3329110-3329232)