Non-Coding RNA Search

rtra01_o1r1.y1

Sequence:


               
               CTCACCTTTTAATATTGCTAGTTAGGAAATATCATGAGTACTATGTCTTAGAAGTATACT
ATTCAACTTATGTATGTCAAAATGTGTTTCTTTTCAAGTGTCCCTTGCCTCTGTCTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCACCTTTTAATATTGCTAGTTAGGAAATATCATGAGTACTATGTCTTAGAAGTATACT
ATTCAACTTATGTATGTCAAAATGTGTTTCTTTTCAAGTGTCCCTTGCCTCTGTCTCCT

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-119, gnl|bosTau2|chr1 (88325448-88325565)
               

               
               2-119, gnl|canFam2|chr23 (34356350-34356471)
               

               
               2-119, gnl|dasNov1|scaffold_12840 (45648-45776)
               

               
               2-119, gnl|echTel1|scaffold_318821 (7258-7389)
               

               
               2-119, gnl|hg17|chr3 (135762785-135762907)
               

               
               2-119, gnl|Hg17|chr3 (135762816-135762937)
               

               
               2-119, gnl|loxAfr1|scaffold_32721 (33061-33197)
               

               
               2-119, gnl|mm7|chr9 (102278451-102278348)
               

               
               2-119, gnl|Mm7|chr9 (102278428-102278316)
               

               
               2-119, gnl|monDom2|scaffold_24 (28294397-28294520)
               

               
               2-119, gnl|panTro1|chr2 (137953472-137953594)
               

               
               2-119, gnl|rheMac2|chr2 (153190872-153190750)
               

               
               2-119, gnl|rn3|chr8 (107568501-107568398)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-119, gnl|bosTau2|chr1 (88325448-88325565)
               

               
               2-119, gnl|canFam2|chr23 (34356350-34356471)
               

               
               2-119, gnl|dasNov1|scaffold_12840 (45648-45776)
               

               
               2-119, gnl|echTel1|scaffold_318821 (7258-7389)
               

               
               2-119, gnl|hg17|chr3 (135762785-135762907)
               

               
               2-119, gnl|Hg17|chr3 (135762816-135762937)
               

               
               2-119, gnl|loxAfr1|scaffold_32721 (33061-33197)
               

               
               2-119, gnl|mm7|chr9 (102278451-102278348)
               

               
               2-119, gnl|Mm7|chr9 (102278428-102278316)
               

               
               2-119, gnl|monDom2|scaffold_24 (28294397-28294520)
               

               
               2-119, gnl|panTro1|chr2 (137953472-137953594)
               

               
               2-119, gnl|rheMac2|chr2 (153190872-153190750)
               

               
               2-119, gnl|rn3|chr8 (107568501-107568398)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tra (0.123092)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.123092)

	2-119, gnl\|bosTau2\|chr1 (88325448-88325565)
	2-119, gnl\|canFam2\|chr23 (34356350-34356471)
	2-119, gnl\|dasNov1\|scaffold_12840 (45648-45776)
	2-119, gnl\|echTel1\|scaffold_318821 (7258-7389)
	2-119, gnl\|hg17\|chr3 (135762785-135762907)
	2-119, gnl\|Hg17\|chr3 (135762816-135762937)
	2-119, gnl\|loxAfr1\|scaffold_32721 (33061-33197)
	2-119, gnl\|mm7\|chr9 (102278451-102278348)
	2-119, gnl\|Mm7\|chr9 (102278428-102278316)
	2-119, gnl\|monDom2\|scaffold_24 (28294397-28294520)
	2-119, gnl\|panTro1\|chr2 (137953472-137953594)
	2-119, gnl\|rheMac2\|chr2 (153190872-153190750)
	2-119, gnl\|rn3\|chr8 (107568501-107568398)