Non-Coding RNA Search

rtra04_k7r1.y1

Sequence:


               
               TTATCTGGTGGGGGCACTCCTATCCTTTTCTTCAGGAAATGTAACATCCTCATTGGTTGA
AAATGTAATAATGAAATTCCcatacattgctggtgggaacataaaatggttcagtgcttt
ggaaaacagtttggaagtccctcaaaacgttaagcatactgttgggatcttactcagcaa
gtctgctccttgttatacacccaagagaactaaaaacatgtccacgtataaacttgtaca
cgtgagattcatagtagcattattcataatagccaaaagggaaaatattccaaatgccca
tcaactgatggatagataaaatctgacatattcatacaatgAATGGGAAGAAATGGGAAG
AAATGAAGTACCTTCTACAACATGGATGAACCTTGAAAATATGCTACATGAACGAAGACA
AACATTAAACATTGTGTGATTCCATTTATATGAAATATCCAGAATGGGCAAGTCTGTACA
AATATATGTCATTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATCTGGTGGGGGCACTCCTATCCTTTTCTTCAGGAAATGTAACATCCTCATTGGTTGA
AAATGTAATAATGAAATTCCcatacattgctggtgggaacataaaatggttcagtgcttt
ggaaaacagtttggaagtccctcaaaacgttaagcatactgttgggatcttactcagcaa
gtctgctccttgttatacacccaagagaactaaaaacatgtccacgtataaacttgtaca
cgtgagattcatagtagcattattcataatagccaaaagggaaaatattccaaatgccca
tcaactgatggatagataaaatctgacatattcatacaatgAATGGGAAGAAATGGGAAG
AAATGAAGTACCTTCTACAACATGGATGAACCTTGAAAATATGCTACATGAACGAAGACA
AACATTAAACATTGTGTGATTCCATTTATATGAAATATCCAGAATGGGCAAGTCTGTACA
AATATATGTCATTGTC

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               72-464, gnl|bosTau2|chr13 (37803114-37802723)
               

               
               72-464, gnl|canFam2|chr24 (46685625-46685937)
               

               
               72-464, gnl|dasNov1|scaffold_71470 (4760-5090)
               

               
               72-464, gnl|hg17|chr20 (56951176-56951440)
               

               
               72-464, gnl|Hg17|chr20 (56951236-56951592)
               

               
               72-464, gnl|loxAfr1|scaffold_16313 (3505-3165)
               

               
               72-464, gnl|panTro1|chr21 (59944785-59945049)
               

               
               72-464, gnl|rheMac2|chr10 (5586209-5585941)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               72-464, gnl|bosTau2|chr13 (37803114-37802723)
               

               
               72-464, gnl|canFam2|chr24 (46685625-46685937)
               

               
               72-464, gnl|dasNov1|scaffold_71470 (4760-5090)
               

               
               72-464, gnl|hg17|chr20 (56951176-56951440)
               

               
               72-464, gnl|Hg17|chr20 (56951236-56951592)
               

               
               72-464, gnl|loxAfr1|scaffold_16313 (3505-3165)
               

               
               72-464, gnl|panTro1|chr21 (59944785-59945049)
               

               
               72-464, gnl|rheMac2|chr10 (5586209-5585941)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               tra (0.123092)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.123092)

	72-464, gnl\|bosTau2\|chr13 (37803114-37802723)
	72-464, gnl\|canFam2\|chr24 (46685625-46685937)
	72-464, gnl\|dasNov1\|scaffold_71470 (4760-5090)
	72-464, gnl\|hg17\|chr20 (56951176-56951440)
	72-464, gnl\|Hg17\|chr20 (56951236-56951592)
	72-464, gnl\|loxAfr1\|scaffold_16313 (3505-3165)
	72-464, gnl\|panTro1\|chr21 (59944785-59945049)
	72-464, gnl\|rheMac2\|chr10 (5586209-5585941)