Non-Coding RNA Search

rtra04_l14r1.y1

Sequence:


               
               GTCCACTTTTTTTGTAGCCCTTTTAACATTTGTGGTTTTCAGTGTACAGGAAAATCGTAT
AAACATTTAAAGGCCTTAAACAAGTATGTACCTTTTTTCTAAGTTATTCACAGAATGTAT
AATTTTATACTGTCTTTGTTTTGTTTCATTTGCCATGTGGAGGGAGAGAAGAATGGAAAT
TGCATAGCCATCCTATCATAATATTGTGTAAATGTACAGTTTGAAGGAATGTAAAGGAAG
AGGCTTCTGTGTTTCACTCATCTTAGACTAATACGAAGATACTTCAGGAATTGCCCTATT
AGAAGTTCCATTATGTTAGAGACAGTGTGGACATCTTTTGTATTTTTAAAACTCACTGAC
ATGGCCAATTAGATATATGTTGCTTTCTATGATGGAGGCTGTCAGACAGACCAAAGCTCT
CCAGGGTAAGTTGGTGACAACTTTCAGAAACCAATGCATTACCCAGAATATTTTTTTTCA
AGAGAATGGCTCAAAGTGTAAAATTTGTTTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCACTTTTTTTGTAGCCCTTTTAACATTTGTGGTTTTCAGTGTACAGGAAAATCGTAT
AAACATTTAAAGGCCTTAAACAAGTATGTACCTTTTTTCTAAGTTATTCACAGAATGTAT
AATTTTATACTGTCTTTGTTTTGTTTCATTTGCCATGTGGAGGGAGAGAAGAATGGAAAT
TGCATAGCCATCCTATCATAATATTGTGTAAATGTACAGTTTGAAGGAATGTAAAGGAAG
AGGCTTCTGTGTTTCACTCATCTTAGACTAATACGAAGATACTTCAGGAATTGCCCTATT
AGAAGTTCCATTATGTTAGAGACAGTGTGGACATCTTTTGTATTTTTAAAACTCACTGAC
ATGGCCAATTAGATATATGTTGCTTTCTATGATGGAGGCTGTCAGACAGACCAAAGCTCT
CCAGGGTAAGTTGGTGACAACTTTCAGAAACCAATGCATTACCCAGAATATTTTTTTTCA
AGAGAATGGCTCAAAGTGTAAAATTTGTTTAAAAAAA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-512, gnl|bosTau2|chr5 (31157364-31156855)
               

               
               1-512, gnl|canFam2|chr10 (7983848-7984481)
               

               
               1-512, gnl|dasNov1|scaffold_8407 (52947-52309)
               

               
               1-512, gnl|echTel1|scaffold_280787 (48195-48831)
               

               
               1-512, gnl|galGal2|chr1 (29631784-29632464)
               

               
               1-512, gnl|hg17|chr12 (60388673-60389318)
               

               
               1-512, gnl|Hg17|chr12 (60389313-60388799)
               

               
               1-512, gnl|loxAfr1|scaffold_4877 (103010-102378)
               

               
               1-512, gnl|mm7|chr10 (123233942-123233291)
               

               
               1-512, gnl|Mm7|chr10 (123233295-123233817)
               

               
               1-512, gnl|monDom2|scaffold_71 (3256493-3257184)
               

               
               1-512, gnl|oryCun1|scaffold_201232 (78232-77599)
               

               
               1-512, gnl|rheMac2|chr11 (58883318-58883964)
               

               
               1-512, gnl|rn3|chr7 (63573627-63572997)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-512, gnl|bosTau2|chr5 (31157364-31156855)
               

               
               1-512, gnl|canFam2|chr10 (7983848-7984481)
               

               
               1-512, gnl|dasNov1|scaffold_8407 (52947-52309)
               

               
               1-512, gnl|echTel1|scaffold_280787 (48195-48831)
               

               
               1-512, gnl|galGal2|chr1 (29631784-29632464)
               

               
               1-512, gnl|hg17|chr12 (60388673-60389318)
               

               
               1-512, gnl|Hg17|chr12 (60389313-60388799)
               

               
               1-512, gnl|loxAfr1|scaffold_4877 (103010-102378)
               

               
               1-512, gnl|mm7|chr10 (123233942-123233291)
               

               
               1-512, gnl|Mm7|chr10 (123233295-123233817)
               

               
               1-512, gnl|monDom2|scaffold_71 (3256493-3257184)
               

               
               1-512, gnl|oryCun1|scaffold_201232 (78232-77599)
               

               
               1-512, gnl|rheMac2|chr11 (58883318-58883964)
               

               
               1-512, gnl|rn3|chr7 (63573627-63572997)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tra (0.123092)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.123092)

	1-512, gnl\|bosTau2\|chr5 (31157364-31156855)
	1-512, gnl\|canFam2\|chr10 (7983848-7984481)
	1-512, gnl\|dasNov1\|scaffold_8407 (52947-52309)
	1-512, gnl\|echTel1\|scaffold_280787 (48195-48831)
	1-512, gnl\|galGal2\|chr1 (29631784-29632464)
	1-512, gnl\|hg17\|chr12 (60388673-60389318)
	1-512, gnl\|Hg17\|chr12 (60389313-60388799)
	1-512, gnl\|loxAfr1\|scaffold_4877 (103010-102378)
	1-512, gnl\|mm7\|chr10 (123233942-123233291)
	1-512, gnl\|Mm7\|chr10 (123233295-123233817)
	1-512, gnl\|monDom2\|scaffold_71 (3256493-3257184)
	1-512, gnl\|oryCun1\|scaffold_201232 (78232-77599)
	1-512, gnl\|rheMac2\|chr11 (58883318-58883964)
	1-512, gnl\|rn3\|chr7 (63573627-63572997)