Non-Coding RNA Search

rtra06_j17r1.y1

Sequence:


               
               TCTTAATATCTGCGTAATGTCTCTTAACAAAGGCAAAACTGGCTTCTAGCCCAGATCCTT
TGGAAAGTAGTATTCTCTGTATAGAAATTACTAAGATTGTTGTATTTATGTTGTATTTAT
TTTCAGATATCTCCCACTTTTTTATGGGAAGATGTATTGACTTTCCATTTATAGAACTGC
TATAAAGTTTCCCTTTAAATGAAAGCATTTAGGATTTCCAAAATATATTCTACTTTGGAA
TTTTTTCAATAAATAATGGTATGGAGAAACACAGATATGACAAAAGCATGAAGGAGAAAT
GT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTAATATCTGCGTAATGTCTCTTAACAAAGGCAAAACTGGCTTCTAGCCCAGATCCTT
TGGAAAGTAGTATTCTCTGTATAGAAATTACTAAGATTGTTGTATTTATGTTGTATTTAT
TTTCAGATATCTCCCACTTTTTTATGGGAAGATGTATTGACTTTCCATTTATAGAACTGC
TATAAAGTTTCCCTTTAAATGAAAGCATTTAGGATTTCCAAAATATATTCTACTTTGGAA
TTTTTTCAATAAATAATGGTATGGAGAAACACAGATATGACAAAAGCATGAAGGAGAAAT
GT

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               5-302, gnl|bosTau2|chr20 (11383431-11383733)
               

               
               5-302, gnl|canFam2|chr2 (49193699-49194523)
               

               
               5-302, gnl|dasNov1|scaffold_14724 (7727-8564)
               

               
               5-302, gnl|hg17|chr5 (58849855-58850627)
               

               
               5-302, gnl|Hg17|chr5 (58850583-58850306)
               

               
               5-302, gnl|mm7|chr13 (106648193-106647419)
               

               
               5-302, gnl|Mm7|chr13 (106647467-106647740)
               

               
               5-302, gnl|panTro1|chr4 (57301402-57300635)
               

               
               5-302, gnl|rheMac2|chr6 (57187497-57188275)
               

               
               5-302, gnl|rn3|chr2 (40804293-40803507)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-302, gnl|bosTau2|chr20 (11383431-11383733)
               

               
               5-302, gnl|canFam2|chr2 (49193699-49194523)
               

               
               5-302, gnl|dasNov1|scaffold_14724 (7727-8564)
               

               
               5-302, gnl|hg17|chr5 (58849855-58850627)
               

               
               5-302, gnl|Hg17|chr5 (58850583-58850306)
               

               
               5-302, gnl|mm7|chr13 (106648193-106647419)
               

               
               5-302, gnl|Mm7|chr13 (106647467-106647740)
               

               
               5-302, gnl|panTro1|chr4 (57301402-57300635)
               

               
               5-302, gnl|rheMac2|chr6 (57187497-57188275)
               

               
               5-302, gnl|rn3|chr2 (40804293-40803507)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               tra (0.123092)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.123092)

	5-302, gnl\|bosTau2\|chr20 (11383431-11383733)
	5-302, gnl\|canFam2\|chr2 (49193699-49194523)
	5-302, gnl\|dasNov1\|scaffold_14724 (7727-8564)
	5-302, gnl\|hg17\|chr5 (58849855-58850627)
	5-302, gnl\|Hg17\|chr5 (58850583-58850306)
	5-302, gnl\|mm7\|chr13 (106648193-106647419)
	5-302, gnl\|Mm7\|chr13 (106647467-106647740)
	5-302, gnl\|panTro1\|chr4 (57301402-57300635)
	5-302, gnl\|rheMac2\|chr6 (57187497-57188275)
	5-302, gnl\|rn3\|chr2 (40804293-40803507)