rtra09_l15r1.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACAGATGCTGAGAGTGAAGTAGCTTCCCTGAACAGACGCATCCAACTGGTTGAGGAAGA GTTGGATCGGGCTCAGGAGCGCTTGGCTACTGCCCTGCAGAAGCTGGAGGAGGCTGAGAA GGCTGCAGATGAGAGTGAAAGAGGAATGAAGGTCATTGAAAATAGAGCCCAGAAGGATGA AGAGAAGATGGAAATCCAAGAGATCCAGCTTAAAGAAGCTAAGCACATTGCTGAAGAGGC TGACCGCAAGTATGAAGAGGTGGCTCGTAAGCTCGTGATCATTGAGGGTGACCTGGAGCG GGCTGAGGAGCGTGCTGAACTATCAGAAAGCAAATGTGCTGAGCTTGAAGAGGAGTTGAA AACTGTGACCAACAACCTGAAGTCGCTGGAGGCTCAGGCTGAGAAGTACTCGCAGAAAGA AGACAAATATGAAGAGGAGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACAGATGCTGAGAGTGAAGTAGCTTCCCTGAACAGACGCATCCAACTGGTTGAGGAAGA GTTGGATCGGGCTCAGGAGCGCTTGGCTACTGCCCTGCAGAAGCTGGAGGAGGCTGAGAA GGCTGCAGATGAGAGTGAAAGAGGAATGAAGGTCATTGAAAATAGAGCCCAGAAGGATGA AGAGAAGATGGAAATCCAAGAGATCCAGCTTAAAGAAGCTAAGCACATTGCTGAAGAGGC TGACCGCAAGTATGAAGAGGTGGCTCGTAAGCTCGTGATCATTGAGGGTGACCTGGAGCG GGCTGAGGAGCGTGCTGAACTATCAGAAAGCAAATGTGCTGAGCTTGAAGAGGAGTTGAA AACTGTGACCAACAACCTGAAGTCGCTGGAGGCTCAGGCTGAGAAGTACTCGCAGAAAGA AGACAAATATGAAGAGGAGAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 2-151, + strand, RNAz p=0.991747 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 2-151, + strand, RNAz p=0.991747 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC008425, + |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 2-151, gnl|bosTau2|chr3 (8286662-8286515) | |
| 2-151, gnl|Hg17|chr1 (150961803-150961656) | |
| 2-151, gnl|Mm7|chr3 (90217179-90217320) | |
| 8-141, gnl|bosTau2|chr10 (30898625-30898758) | |
| 8-141, gnl|canFam2|chr30 (30647026-30647180) | |
| 8-141, gnl|danRer3|chr18 (46365359-46365513) | |
| 8-141, gnl|dasNov1|scaffold_7454 (58860-59015) | |
| 8-141, gnl|echTel1|scaffold_288449 (565-719) | |
| 8-141, gnl|fr1|chrUn (201006527-201006678) | |
| 8-141, gnl|galGal2|chr10 (4961794-4961651) | |
| 8-141, gnl|hg17|chr15 (61136233-61136387) | |
| 8-141, gnl|Hg17|chr15 (61136237-61136370) | |
| 8-141, gnl|loxAfr1|scaffold_46717 (13836-13991) | |
| 8-141, gnl|mm7|chr9 (67067603-67067450) | |
| 8-141, gnl|Mm7|chr9 (67067597-67067464) | |
| 8-141, gnl|monDom2|scaffold_12 (50774535-50774381) | |
| 8-141, gnl|oryCun1|scaffold_183267 (44066-43912) | |
| 8-141, gnl|panTro1|chr16 (61592303-61592457) | |
| 8-141, gnl|rheMac2|chr7 (41442060-41442214) | |
| 8-141, gnl|rn3|chr8 (71364024-71363870) | |
| 8-141, gnl|tetNig1|chr5 (2575381-2575243) | |
| 8-141, gnl|xenTro1|scaffold_62 (1109650-1109793) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-151, gnl|bosTau2|chr3 (8286662-8286515) | |
| 2-151, gnl|Hg17|chr1 (150961803-150961656) | |
| 2-151, gnl|Mm7|chr3 (90217179-90217320) | |
| 8-141, gnl|bosTau2|chr10 (30898625-30898758) | |
| 8-141, gnl|canFam2|chr30 (30647026-30647180) | |
| 8-141, gnl|danRer3|chr18 (46365359-46365513) | |
| 8-141, gnl|dasNov1|scaffold_7454 (58860-59015) | |
| 8-141, gnl|echTel1|scaffold_288449 (565-719) | |
| 8-141, gnl|fr1|chrUn (201006527-201006678) | |
| 8-141, gnl|galGal2|chr10 (4961794-4961651) | |
| 8-141, gnl|hg17|chr15 (61136233-61136387) | |
| 8-141, gnl|Hg17|chr15 (61136237-61136370) | |
| 8-141, gnl|loxAfr1|scaffold_46717 (13836-13991) | |
| 8-141, gnl|mm7|chr9 (67067603-67067450) | |
| 8-141, gnl|Mm7|chr9 (67067597-67067464) | |
| 8-141, gnl|monDom2|scaffold_12 (50774535-50774381) | |
| 8-141, gnl|oryCun1|scaffold_183267 (44066-43912) | |
| 8-141, gnl|panTro1|chr16 (61592303-61592457) | |
| 8-141, gnl|rheMac2|chr7 (41442060-41442214) | |
| 8-141, gnl|rn3|chr8 (71364024-71363870) | |
| 8-141, gnl|tetNig1|chr5 (2575381-2575243) | |
| 8-141, gnl|xenTro1|scaffold_62 (1109650-1109793) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tra (0.123092) |