Non-Coding RNA Search

rtra11_n24r1.y1

Sequence:


               
               CCAAGGCCCTGTGTAAGAGAGCTGGTTTTACTGCAGCCCAACCAACTCTATCTCACCACC
AGTCTGATAGGTAAAAAACAGTATATTTATCTATTTGATATGCATTTCTTTGATACCTAG
TAAGGGTGAATATTTTCCCCATATGTCTACAGTGCATTTGTAATTCTTCTGTAAGTTGGC
TATTCATATTCTGCATAAAAGGAATATTACTTAACTTCTCTGAAACTCTGTTTTCTCAGC
TGTAAGATGGGGTTTCCATGTGGTCTAAATGGAATAACACATTGCAGATCCAAAATATGG
CAGGTGTGCAAAGTATTCTTTCCCTCCACGTTATTTCCTGGATTAAGAGCTTCCAGAGTG
TGGAGACTCCTTTCTTTATTTATCCCAGCACCTAGCGCCGTGCTTGCAACAGAGAAGGAG
CTCAAGAAGTTTTTGAGAAAGGAAGACTAGTTGGGATTCGAAAACATTTTGAGTATATCA
GGAAAAGGAGTGGGAAAGGTAGATGCCAAGATCCAGTGAATCAGCAGTGAGAAAACTGGT
GGGTTCCTCAGAAGCTTACTACTAAAATGGAAGAATTTTTATTTTCAAAGCTCTACAAGA
AATCATTTCTTATGAACTAAAATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAGGCCCTGTGTAAGAGAGCTGGTTTTACTGCAGCCCAACCAACTCTATCTCACCACC
AGTCTGATAGGTAAAAAACAGTATATTTATCTATTTGATATGCATTTCTTTGATACCTAG
TAAGGGTGAATATTTTCCCCATATGTCTACAGTGCATTTGTAATTCTTCTGTAAGTTGGC
TATTCATATTCTGCATAAAAGGAATATTACTTAACTTCTCTGAAACTCTGTTTTCTCAGC
TGTAAGATGGGGTTTCCATGTGGTCTAAATGGAATAACACATTGCAGATCCAAAATATGG
CAGGTGTGCAAAGTATTCTTTCCCTCCACGTTATTTCCTGGATTAAGAGCTTCCAGAGTG
TGGAGACTCCTTTCTTTATTTATCCCAGCACCTAGCGCCGTGCTTGCAACAGAGAAGGAG
CTCAAGAAGTTTTTGAGAAAGGAAGACTAGTTGGGATTCGAAAACATTTTGAGTATATCA
GGAAAAGGAGTGGGAAAGGTAGATGCCAAGATCCAGTGAATCAGCAGTGAGAAAACTGGT
GGGTTCCTCAGAAGCTTACTACTAAAATGGAAGAATTTTTATTTTCAAAGCTCTACAAGA
AATCATTTCTTATGAACTAAAATGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               319-437, + strand, RNAz p=0.548197

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               319-437, + strand, RNAz p=0.548197

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               150-616, gnl|bosTau2|chr10 (5135009-5135473)
               

               
               150-616, gnl|Hg17|chr5 (79304223-79303720)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               150-616, gnl|bosTau2|chr10 (5135009-5135473)
               

               
               150-616, gnl|Hg17|chr5 (79304223-79303720)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tra (0.123092)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.123092)

	150-616, gnl\|bosTau2\|chr10 (5135009-5135473)
	150-616, gnl\|Hg17\|chr5 (79304223-79303720)