Non-Coding RNA Search

rtra13_h24r1.y1

Sequence:


               
               AGCAACAAGTGCTAAATAGTGTGAATGACTCCACCTGCTGAAAGAGTGCAGCGAGGACGT
GCCTGGGTTTCACTGGCGTGCAGGGACTTGCTGCTGGAGCCATCCTGCGAGGGCCAGGAT
GGAACTTGAAGTCTGGAGAATTAACCCCCTTCTTTGTGGCAGCATCTTTGCCTCCGTAAA
AGTGAACTCAAACTTCCTTATCTCCCATCGAAAGCCACCTGTGAACAAAAACCTGAAAAG
GGCAGCTCTAGTTCTGGCAGCAGCCAAGAAAAACCAAAGGTCCTGCCAGCAGCCAAGGCA
GATTGACCAACAGAATGTGGACAACATGAAATTCTGAAAGTTCTGAGCCTAGATCATATG
AAGCCCAGTTCTTTTAACATTCTCTTTGGGAGCCTTGATCTGCTATGTTAGAAATACCAT
TATCCTGAGACTGTCATACTGAAGACCACAGGAAGACCCTTTGGTCAACAATCCCAGCTG
AGCCAAGCCTTCCAGCTGCACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAACAAGTGCTAAATAGTGTGAATGACTCCACCTGCTGAAAGAGTGCAGCGAGGACGT
GCCTGGGTTTCACTGGCGTGCAGGGACTTGCTGCTGGAGCCATCCTGCGAGGGCCAGGAT
GGAACTTGAAGTCTGGAGAATTAACCCCCTTCTTTGTGGCAGCATCTTTGCCTCCGTAAA
AGTGAACTCAAACTTCCTTATCTCCCATCGAAAGCCACCTGTGAACAAAAACCTGAAAAG
GGCAGCTCTAGTTCTGGCAGCAGCCAAGAAAAACCAAAGGTCCTGCCAGCAGCCAAGGCA
GATTGACCAACAGAATGTGGACAACATGAAATTCTGAAAGTTCTGAGCCTAGATCATATG
AAGCCCAGTTCTTTTAACATTCTCTTTGGGAGCCTTGATCTGCTATGTTAGAAATACCAT
TATCCTGAGACTGTCATACTGAAGACCACAGGAAGACCCTTTGGTCAACAATCCCAGCTG
AGCCAAGCCTTCCAGCTGCACCT

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               80-301, gnl|bosTau2|chrX (30438229-30438448)
               

               
               80-301, gnl|Hg17|chr11 (110816744-110816528)
               

               
               80-301, gnl|Mm7|chr9 (51142910-51143141)
               


               
               363-503, gnl|bosTau2|chrX (30439033-30439177)
               

               
               363-503, gnl|canFam2|chr5 (24634909-24634513)
               

               
               363-503, gnl|dasNov1|scaffold_3219 (14094-13720)
               

               
               363-503, gnl|echTel1|scaffold_218244 (3051-2739)
               

               
               363-503, gnl|hg17|chr11 (110815930-110816256)
               

               
               363-503, gnl|loxAfr1|scaffold_16062 (44180-43825)
               

               
               363-503, gnl|mm7|chr9 (51143713-51143389)
               

               
               363-503, gnl|panTro1|chr9 (112798632-112798959)
               

               
               363-503, gnl|rheMac2|chr14 (109903520-109903833)
               

               
               363-503, gnl|rn3|chr8 (54500720-54500397)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               80-301, gnl|bosTau2|chrX (30438229-30438448)
               

               
               80-301, gnl|Hg17|chr11 (110816744-110816528)
               

               
               80-301, gnl|Mm7|chr9 (51142910-51143141)
               


               
               363-503, gnl|bosTau2|chrX (30439033-30439177)
               

               
               363-503, gnl|canFam2|chr5 (24634909-24634513)
               

               
               363-503, gnl|dasNov1|scaffold_3219 (14094-13720)
               

               
               363-503, gnl|echTel1|scaffold_218244 (3051-2739)
               

               
               363-503, gnl|hg17|chr11 (110815930-110816256)
               

               
               363-503, gnl|loxAfr1|scaffold_16062 (44180-43825)
               

               
               363-503, gnl|mm7|chr9 (51143713-51143389)
               

               
               363-503, gnl|panTro1|chr9 (112798632-112798959)
               

               
               363-503, gnl|rheMac2|chr14 (109903520-109903833)
               

               
               363-503, gnl|rn3|chr8 (54500720-54500397)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tra (0.123092)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.123092)

	80-301, gnl\|bosTau2\|chrX (30438229-30438448)
	80-301, gnl\|Hg17\|chr11 (110816744-110816528)
	80-301, gnl\|Mm7\|chr9 (51142910-51143141)

	363-503, gnl\|bosTau2\|chrX (30439033-30439177)
	363-503, gnl\|canFam2\|chr5 (24634909-24634513)
	363-503, gnl\|dasNov1\|scaffold_3219 (14094-13720)
	363-503, gnl\|echTel1\|scaffold_218244 (3051-2739)
	363-503, gnl\|hg17\|chr11 (110815930-110816256)
	363-503, gnl\|loxAfr1\|scaffold_16062 (44180-43825)
	363-503, gnl\|mm7\|chr9 (51143713-51143389)
	363-503, gnl\|panTro1\|chr9 (112798632-112798959)
	363-503, gnl\|rheMac2\|chr14 (109903520-109903833)
	363-503, gnl\|rn3\|chr8 (54500720-54500397)