rtra17_i5r1.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAATCAAGTTCTTCGGGAAGCAGGTCTCTATAGAGAAGCTCTGGAACACCTTTGTACCT ATGAAAAGCAGATTTGTGATAAACTTGCTGTAGAAGAAACCAAAGGGGAACTTCTGTTGC AGTTATGTCGTTTGGAAGATGCAGCTGATGTTTACAGAGGATTACAAGAGAGAAATCCTG AAAACTGGGCCTATTACAAAGGCTTAGAAAAGGCGCTCAAGCCAGCTAATATGTTAGAAC GACTAAAAATTTATGAGGAAGCCTGGACTAAATATCCCAGGGGATTGGTGCCAAGAAGAC TGCCGTTGAACTTTTTATCTGGTGAGAAGTTTAAAGAATGTTTGGATAAATTCCTTAGGA TGAACTTCAGCAAGGGTTGTCCACCAGTCTTCAATACTTTGAGGTCTTTATATAAAGATA AAGAAAAGGTGGCAATCATAGAAGAATTAGTAGTAGGCTATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAATCAAGTTCTTCGGGAAGCAGGTCTCTATAGAGAAGCTCTGGAACACCTTTGTACCT ATGAAAAGCAGATTTGTGATAAACTTGCTGTAGAAGAAACCAAAGGGGAACTTCTGTTGC AGTTATGTCGTTTGGAAGATGCAGCTGATGTTTACAGAGGATTACAAGAGAGAAATCCTG AAAACTGGGCCTATTACAAAGGCTTAGAAAAGGCGCTCAAGCCAGCTAATATGTTAGAAC GACTAAAAATTTATGAGGAAGCCTGGACTAAATATCCCAGGGGATTGGTGCCAAGAAGAC TGCCGTTGAACTTTTTATCTGGTGAGAAGTTTAAAGAATGTTTGGATAAATTCCTTAGGA TGAACTTCAGCAAGGGTTGTCCACCAGTCTTCAATACTTTGAGGTCTTTATATAAAGATA AAGAAAAGGTGGCAATCATAGAAGAATTAGTAGTAGGCTATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 112-229, + strand, RNAz p=0.615767 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 112-229, + strand, RNAz p=0.615767 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 104-229, gnl|bosTau2|chr17 (12836996-12836871) | |
| 104-229, gnl|canFam2|chr19 (6348584-6348447) | |
| 104-229, gnl|danRer3|chrUn (148553306-148553442) | |
| 104-229, gnl|dasNov1|scaffold_15155 (12120-12259) | |
| 104-229, gnl|echTel1|scaffold_285698 (437-295) | |
| 104-229, gnl|fr1|chrUn (188502788-188502674) | |
| 104-229, gnl|galGal2|chr4 (29771666-29771809) | |
| 104-229, gnl|hg17|chr4 (140628208-140628353) | |
| 104-229, gnl|Hg17|chr4 (140628219-140628344) | |
| 104-229, gnl|loxAfr1|scaffold_9403 (10086-10228) | |
| 104-229, gnl|mm7|chr3 (51571166-51571307) | |
| 104-229, gnl|Mm7|chr3 (51571173-51571298) | |
| 104-229, gnl|monDom2|scaffold_9 (6843416-6843548) | |
| 104-229, gnl|oryCun1|scaffold_213726 (371-513) | |
| 104-229, gnl|panTro1|chr3_random (16600088-16599943) | |
| 104-229, gnl|rheMac2|chr5 (131815010-131815155) | |
| 104-229, gnl|rn3|chr2 (140291045-140291186) | |
| 104-229, gnl|tetNig1|chrUn_random (8140945-8141070) | |
| 104-229, gnl|xenTro1|scaffold_429 (121807-121949) | |
| 321-430, gnl|bosTau2|chr17 (12835291-12835182) | |
| 321-430, gnl|canFam2|chr19 (6346901-6346769) | |
| 321-430, gnl|danRer3|chrUn (148553709-148553825) | |
| 321-430, gnl|dasNov1|scaffold_15155 (13582-13714) | |
| 321-430, gnl|echTel1|scaffold_312715 (3356-3483) | |
| 321-430, gnl|fr1|chrUn (188501915-188501784) | |
| 321-430, gnl|galGal2|chr4 (29772457-29772585) | |
| 321-430, gnl|hg17|chr4 (140630247-140630379) | |
| 321-430, gnl|Hg17|chr4 (140630263-140630372) | |
| 321-430, gnl|loxAfr1|scaffold_48724 (11804-11693) | |
| 321-430, gnl|mm7|chr3 (51573065-51573196) | |
| 321-430, gnl|Mm7|chr3 (51573080-51573189) | |
| 321-430, gnl|monDom2|scaffold_9 (6846853-6846964) | |
| 321-430, gnl|oryCun1|scaffold_213726 (2045-2177) | |
| 321-430, gnl|panTro1|chr3_random (16598047-16597915) | |
| 321-430, gnl|rheMac2|chr5 (131817064-131817196) | |
| 321-430, gnl|rn3|chr2 (140294469-140294600) | |
| 321-430, gnl|tetNig1|chrUn_random (8141299-8141418) | |
| 321-430, gnl|xenTro1|scaffold_429 (122266-122392) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 104-229, gnl|bosTau2|chr17 (12836996-12836871) | |
| 104-229, gnl|canFam2|chr19 (6348584-6348447) | |
| 104-229, gnl|danRer3|chrUn (148553306-148553442) | |
| 104-229, gnl|dasNov1|scaffold_15155 (12120-12259) | |
| 104-229, gnl|echTel1|scaffold_285698 (437-295) | |
| 104-229, gnl|fr1|chrUn (188502788-188502674) | |
| 104-229, gnl|galGal2|chr4 (29771666-29771809) | |
| 104-229, gnl|hg17|chr4 (140628208-140628353) | |
| 104-229, gnl|Hg17|chr4 (140628219-140628344) | |
| 104-229, gnl|loxAfr1|scaffold_9403 (10086-10228) | |
| 104-229, gnl|mm7|chr3 (51571166-51571307) | |
| 104-229, gnl|Mm7|chr3 (51571173-51571298) | |
| 104-229, gnl|monDom2|scaffold_9 (6843416-6843548) | |
| 104-229, gnl|oryCun1|scaffold_213726 (371-513) | |
| 104-229, gnl|panTro1|chr3_random (16600088-16599943) | |
| 104-229, gnl|rheMac2|chr5 (131815010-131815155) | |
| 104-229, gnl|rn3|chr2 (140291045-140291186) | |
| 104-229, gnl|tetNig1|chrUn_random (8140945-8141070) | |
| 104-229, gnl|xenTro1|scaffold_429 (121807-121949) | |
| 321-430, gnl|bosTau2|chr17 (12835291-12835182) | |
| 321-430, gnl|canFam2|chr19 (6346901-6346769) | |
| 321-430, gnl|danRer3|chrUn (148553709-148553825) | |
| 321-430, gnl|dasNov1|scaffold_15155 (13582-13714) | |
| 321-430, gnl|echTel1|scaffold_312715 (3356-3483) | |
| 321-430, gnl|fr1|chrUn (188501915-188501784) | |
| 321-430, gnl|galGal2|chr4 (29772457-29772585) | |
| 321-430, gnl|hg17|chr4 (140630247-140630379) | |
| 321-430, gnl|Hg17|chr4 (140630263-140630372) | |
| 321-430, gnl|loxAfr1|scaffold_48724 (11804-11693) | |
| 321-430, gnl|mm7|chr3 (51573065-51573196) | |
| 321-430, gnl|Mm7|chr3 (51573080-51573189) | |
| 321-430, gnl|monDom2|scaffold_9 (6846853-6846964) | |
| 321-430, gnl|oryCun1|scaffold_213726 (2045-2177) | |
| 321-430, gnl|panTro1|chr3_random (16598047-16597915) | |
| 321-430, gnl|rheMac2|chr5 (131817064-131817196) | |
| 321-430, gnl|rn3|chr2 (140294469-140294600) | |
| 321-430, gnl|tetNig1|chrUn_random (8141299-8141418) | |
| 321-430, gnl|xenTro1|scaffold_429 (122266-122392) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tra (0.123092) |