Non-Coding RNA Search

rtra21_b20r1.y1

Sequence:


               
               AGGGACCCTCTAGGGTTCCTGCATTTGTCCTCTGAGGAGCGGACCCAGCCCAGCAAAATC
TGGAGGCTGCTTAGAAACCCTGCATGCGGCACTGTGATCATTTCTCGCCATTTATTTGTG
CTGAAGCTATGTACCTTTGATTAAACCTGGCACTGCACTTTAGAAGTCACTGATAGACAT
CAAAGAAGTTAGCTCTCCTAGATCAAAATAGACTGAAGGTTTGGACCTGGACCAGCGCTG
TTTGAACACTGAGAACAGTCCACAGCAGGAGGCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGACCCTCTAGGGTTCCTGCATTTGTCCTCTGAGGAGCGGACCCAGCCCAGCAAAATC
TGGAGGCTGCTTAGAAACCCTGCATGCGGCACTGTGATCATTTCTCGCCATTTATTTGTG
CTGAAGCTATGTACCTTTGATTAAACCTGGCACTGCACTTTAGAAGTCACTGATAGACAT
CAAAGAAGTTAGCTCTCCTAGATCAAAATAGACTGAAGGTTTGGACCTGGACCAGCGCTG
TTTGAACACTGAGAACAGTCCACAGCAGGAGGCAAG

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               1-275, gnl|bosTau2|chr23 (31155813-31156087)
               

               
               1-275, gnl|canFam2|chr35 (21050404-21050737)
               

               
               1-275, gnl|echTel1|scaffold_316082 (40073-39741)
               

               
               1-275, gnl|galGal2|chr2 (59660588-59660228)
               

               
               1-275, gnl|hg17|chr6 (19547067-19547401)
               

               
               1-275, gnl|Hg17|chr6 (19547122-19547396)
               

               
               1-275, gnl|loxAfr1|scaffold_82580 (5650-5985)
               

               
               1-275, gnl|mm7|chr13 (47431586-47431941)
               

               
               1-275, gnl|Mm7|chr13 (47431641-47431936)
               

               
               1-275, gnl|monDom2|scaffold_3 (108857675-108857987)
               

               
               1-275, gnl|oryCun1|scaffold_213238 (76512-76844)
               

               
               1-275, gnl|panTro1|chr5 (19920714-19921048)
               

               
               1-275, gnl|rheMac2|chr4 (19474162-19474496)
               

               
               1-275, gnl|rn3|chr17 (22859208-22858872)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-275, gnl|bosTau2|chr23 (31155813-31156087)
               

               
               1-275, gnl|canFam2|chr35 (21050404-21050737)
               

               
               1-275, gnl|echTel1|scaffold_316082 (40073-39741)
               

               
               1-275, gnl|galGal2|chr2 (59660588-59660228)
               

               
               1-275, gnl|hg17|chr6 (19547067-19547401)
               

               
               1-275, gnl|Hg17|chr6 (19547122-19547396)
               

               
               1-275, gnl|loxAfr1|scaffold_82580 (5650-5985)
               

               
               1-275, gnl|mm7|chr13 (47431586-47431941)
               

               
               1-275, gnl|Mm7|chr13 (47431641-47431936)
               

               
               1-275, gnl|monDom2|scaffold_3 (108857675-108857987)
               

               
               1-275, gnl|oryCun1|scaffold_213238 (76512-76844)
               

               
               1-275, gnl|panTro1|chr5 (19920714-19921048)
               

               
               1-275, gnl|rheMac2|chr4 (19474162-19474496)
               

               
               1-275, gnl|rn3|chr17 (22859208-22858872)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tra (0.123092)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.123092)

	1-275, gnl\|bosTau2\|chr23 (31155813-31156087)
	1-275, gnl\|canFam2\|chr35 (21050404-21050737)
	1-275, gnl\|echTel1\|scaffold_316082 (40073-39741)
	1-275, gnl\|galGal2\|chr2 (59660588-59660228)
	1-275, gnl\|hg17\|chr6 (19547067-19547401)
	1-275, gnl\|Hg17\|chr6 (19547122-19547396)
	1-275, gnl\|loxAfr1\|scaffold_82580 (5650-5985)
	1-275, gnl\|mm7\|chr13 (47431586-47431941)
	1-275, gnl\|Mm7\|chr13 (47431641-47431936)
	1-275, gnl\|monDom2\|scaffold_3 (108857675-108857987)
	1-275, gnl\|oryCun1\|scaffold_213238 (76512-76844)
	1-275, gnl\|panTro1\|chr5 (19920714-19921048)
	1-275, gnl\|rheMac2\|chr4 (19474162-19474496)
	1-275, gnl\|rn3\|chr17 (22859208-22858872)