Non-Coding RNA Search

rtra27_i9r1.y1

Sequence:


               
               AGGGGGCATGCTCCAGAAAGAGCTCATCTCTTTGGCTTTTCTGAGTCACATTTCAGTTAA
TGGCATCGCCATCCCCCCAGGGTAGCTCTTCCTTGAAATTTAGCATCACTGCCCCATCCT
ATATCCAGCCACTCACCAGACATGTTCTATTGCCTGCCTCAGCTCTTTTACCACCTGTCC
CTTCTTTTTCTCAGTCCTATTTCAGGATCTCATTATTATTTATCTTGATTATTACAACAG
CATAATGATGGGCTTCTTTGCTTCTAGTCTTTCTGGACTATTCTACCACAGTTTACTTCT
AAAATTACTAATCTTACATCATCTGTCTGTTTAAAAATCCCTAATGGCTTTCCACAAAAA
AAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGGGCATGCTCCAGAAAGAGCTCATCTCTTTGGCTTTTCTGAGTCACATTTCAGTTAA
TGGCATCGCCATCCCCCCAGGGTAGCTCTTCCTTGAAATTTAGCATCACTGCCCCATCCT
ATATCCAGCCACTCACCAGACATGTTCTATTGCCTGCCTCAGCTCTTTTACCACCTGTCC
CTTCTTTTTCTCAGTCCTATTTCAGGATCTCATTATTATTTATCTTGATTATTACAACAG
CATAATGATGGGCTTCTTTGCTTCTAGTCTTTCTGGACTATTCTACCACAGTTTACTTCT
AAAATTACTAATCTTACATCATCTGTCTGTTTAAAAATCCCTAATGGCTTTCCACAAAAA
AAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               4-119, + strand, RNAz p=0.987964
               

               
               233-336, - strand, RNAz p=0.870279

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-119, + strand, RNAz p=0.987964
               

               
               233-336, - strand, RNAz p=0.870279

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               4-370, gnl|bosTau2|chr21 (21609694-21610077)
               

               
               4-370, gnl|canFam2|chr30 (42191944-42191708)
               

               
               4-370, gnl|echTel1|scaffold_302549 (3429-3677)
               

               
               4-370, gnl|hg17|chr15 (75203783-75204038)
               

               
               4-370, gnl|Hg17|chr15 (75203808-75204154)
               

               
               4-370, gnl|mm7|chr9 (56245724-56245979)
               

               
               4-370, gnl|oryCun1|scaffold_192207 (15956-16189)
               

               
               4-370, gnl|panTro1|chr16_random (23633543-23633288)
               

               
               4-370, gnl|rheMac2|chr7 (56136421-56136676)
               

               
               4-370, gnl|rn3|chr8 (59835069-59835315)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-370, gnl|bosTau2|chr21 (21609694-21610077)
               

               
               4-370, gnl|canFam2|chr30 (42191944-42191708)
               

               
               4-370, gnl|echTel1|scaffold_302549 (3429-3677)
               

               
               4-370, gnl|hg17|chr15 (75203783-75204038)
               

               
               4-370, gnl|Hg17|chr15 (75203808-75204154)
               

               
               4-370, gnl|mm7|chr9 (56245724-56245979)
               

               
               4-370, gnl|oryCun1|scaffold_192207 (15956-16189)
               

               
               4-370, gnl|panTro1|chr16_random (23633543-23633288)
               

               
               4-370, gnl|rheMac2|chr7 (56136421-56136676)
               

               
               4-370, gnl|rn3|chr8 (59835069-59835315)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tra (0.123092)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.123092)

	4-119, + strand, RNAz p=0.987964
	233-336, - strand, RNAz p=0.870279

	4-370, gnl\|bosTau2\|chr21 (21609694-21610077)
	4-370, gnl\|canFam2\|chr30 (42191944-42191708)
	4-370, gnl\|echTel1\|scaffold_302549 (3429-3677)
	4-370, gnl\|hg17\|chr15 (75203783-75204038)
	4-370, gnl\|Hg17\|chr15 (75203808-75204154)
	4-370, gnl\|mm7\|chr9 (56245724-56245979)
	4-370, gnl\|oryCun1\|scaffold_192207 (15956-16189)
	4-370, gnl\|panTro1\|chr16_random (23633543-23633288)
	4-370, gnl\|rheMac2\|chr7 (56136421-56136676)
	4-370, gnl\|rn3\|chr8 (59835069-59835315)