Non-Coding RNA Search

rtra27_n3r1.y1

Sequence:


               
               ACAGAGATACCATCAGAGAACAAACACCAATGTCAACTGCCCAATTGAGTGCTTCATGCC
TTTAGATGTACAGGCTGACATAGAAGATTCCCGAGAGTAAAATTTCCAAGCTGGAGAAAC
AAGCACGGATCTCTGCCAAGGTCCATCCAAACTGGAGTGATGTTAGCAGACCCCATCCCA
GTTTGTTTCTTTCTTAAGCCCTTTGCTCTGGAGTAATTTCTTCAGCTTCAGCTCAACTCA
CAGCTTCTCCAAGCATCACCCTGGGAGTGTTTTGAGACTTTTCTCATAAATGGCAGTACA
TGGCCTGCTCTCCAAAGTGTTCAGTACCGCTCAATATTTTAAATGAAATGATTCTAACTT
GTGATCTGAATTGGGATCAGTAGGGTTGCACATGTACCAACCAAGATGCAAAATGTCTTG
AAATGATATTACCAAAAATTTTAAGTAGGAAAGTTACCCAAACACTTCTGCTTCCACTTA
ACTGTCTGGCCCGCAATATTGTAGGAACAGCATATCCTTGTTACTGTGATATTTAAAATA
TCCACAGTACTCACTTTTTCCAGATGACTTTGGTAATTGCCTAGAAATATCTTTCTCTTA
CCTGTTATTTATCAATTTTTCCCAGTATTTTCATATGGAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGAGATACCATCAGAGAACAAACACCAATGTCAACTGCCCAATTGAGTGCTTCATGCC
TTTAGATGTACAGGCTGACATAGAAGATTCCCGAGAGTAAAATTTCCAAGCTGGAGAAAC
AAGCACGGATCTCTGCCAAGGTCCATCCAAACTGGAGTGATGTTAGCAGACCCCATCCCA
GTTTGTTTCTTTCTTAAGCCCTTTGCTCTGGAGTAATTTCTTCAGCTTCAGCTCAACTCA
CAGCTTCTCCAAGCATCACCCTGGGAGTGTTTTGAGACTTTTCTCATAAATGGCAGTACA
TGGCCTGCTCTCCAAAGTGTTCAGTACCGCTCAATATTTTAAATGAAATGATTCTAACTT
GTGATCTGAATTGGGATCAGTAGGGTTGCACATGTACCAACCAAGATGCAAAATGTCTTG
AAATGATATTACCAAAAATTTTAAGTAGGAAAGTTACCCAAACACTTCTGCTTCCACTTA
ACTGTCTGGCCCGCAATATTGTAGGAACAGCATATCCTTGTTACTGTGATATTTAAAATA
TCCACAGTACTCACTTTTTCCAGATGACTTTGGTAATTGCCTAGAAATATCTTTCTCTTA
CCTGTTATTTATCAATTTTTCCCAGTATTTTCATATGGAATC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               144-257, - strand, RNAz p=0.640934
               

               
               448-562, - strand, RNAz p=0.595104

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               144-257, - strand, RNAz p=0.640934
               

               
               448-562, - strand, RNAz p=0.595104

Homologous human UTR: 2 entry(ies)

More info

Homologous human UTR: 2 entry(ies)

Help | Less info


               
               3' of AY450391, -
               

               
               3' of AY450391, -

Homologous human UTR: 2 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of AY450391, -
               

               
               3' of AY450391, -

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               29-640, gnl|bosTau2|chr2 (47489195-47489808)
               

               
               29-640, gnl|Hg17|chr2 (216051855-216051238)
               

               
               29-640, gnl|Mm7|chr1 (71828124-71827506)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-640, gnl|bosTau2|chr2 (47489195-47489808)
               

               
               29-640, gnl|Hg17|chr2 (216051855-216051238)
               

               
               29-640, gnl|Mm7|chr1 (71828124-71827506)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tra (0.123092)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.123092)

	144-257, - strand, RNAz p=0.640934
	448-562, - strand, RNAz p=0.595104

	29-640, gnl\|bosTau2\|chr2 (47489195-47489808)
	29-640, gnl\|Hg17\|chr2 (216051855-216051238)
	29-640, gnl\|Mm7\|chr1 (71828124-71827506)