Non-Coding RNA Search

rtra32_e23.y1

Sequence:


               
               AATAATCCATGATGCTTAGAAAAATCCTCTGGACTTGTGAAACTTCAGTGGCAAGAAGAG
GGAAGGAATTTAGTGTCCAAAATCTGGGTTAAGAGTACATGATTCAAGCACATTAAAGCA
AGTACTTGTCAATAACAGAAGGTCAGGATTTTGCTCTGGATCAGATTAAGAATTTGTGAA
AGAGCTACCAAGGCCTTGAGCATCCTCACAAGGTTTTTATTATACTGTATATACCTGCAT
ATGTATTAAAAGGAACTTAATATTAAATAGTATCAGTGatcccactcctgggaatatatc
cagagaaaactataattcaaaaagatacatgcaccccaatgtttatagcggcactattta
cagtggccaagacatgggagcaacctaaatgttcatcagcagatgaacggataaagaaga
tgtggtatatgtgtgtatatatatatgcacaatagaatgctactcagccatacaaggaat
gaaataacgccatatgaagtaacctgaatggagctagagatgatcatactaagtg

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATAATCCATGATGCTTAGAAAAATCCTCTGGACTTGTGAAACTTCAGTGGCAAGAAGAG
GGAAGGAATTTAGTGTCCAAAATCTGGGTTAAGAGTACATGATTCAAGCACATTAAAGCA
AGTACTTGTCAATAACAGAAGGTCAGGATTTTGCTCTGGATCAGATTAAGAATTTGTGAA
AGAGCTACCAAGGCCTTGAGCATCCTCACAAGGTTTTTATTATACTGTATATACCTGCAT
ATGTATTAAAAGGAACTTAATATTAAATAGTATCAGTGatcccactcctgggaatatatc
cagagaaaactataattcaaaaagatacatgcaccccaatgtttatagcggcactattta
cagtggccaagacatgggagcaacctaaatgttcatcagcagatgaacggataaagaaga
tgtggtatatgtgtgtatatatatatgcacaatagaatgctactcagccatacaaggaat
gaaataacgccatatgaagtaacctgaatggagctagagatgatcatactaagtg

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-266, gnl|bosTau2|chr20 (35594690-35594426)
               

               
               1-266, gnl|canFam2|chr34 (6188358-6188058)
               

               
               1-266, gnl|dasNov1|scaffold_18416 (42140-42459)
               

               
               1-266, gnl|echTel1|scaffold_201033 (4230-4545)
               

               
               1-266, gnl|hg17|chr5 (11301141-11301448)
               

               
               1-266, gnl|Hg17|chr5 (11301218-11301485)
               

               
               1-266, gnl|mm7|chr15 (30872424-30872200)
               

               
               1-266, gnl|oryCun1|scaffold_213931 (127380-127691)
               

               
               1-266, gnl|panTro1|chr4 (11706538-11706845)
               

               
               1-266, gnl|rheMac2|chr6 (11183789-11184102)
               

               
               1-266, gnl|rn3|chr2 (82781283-82781031)
               


               
               274-429, gnl|bosTau2|chr5 (42727185-42727031)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-266, gnl|bosTau2|chr20 (35594690-35594426)
               

               
               1-266, gnl|canFam2|chr34 (6188358-6188058)
               

               
               1-266, gnl|dasNov1|scaffold_18416 (42140-42459)
               

               
               1-266, gnl|echTel1|scaffold_201033 (4230-4545)
               

               
               1-266, gnl|hg17|chr5 (11301141-11301448)
               

               
               1-266, gnl|Hg17|chr5 (11301218-11301485)
               

               
               1-266, gnl|mm7|chr15 (30872424-30872200)
               

               
               1-266, gnl|oryCun1|scaffold_213931 (127380-127691)
               

               
               1-266, gnl|panTro1|chr4 (11706538-11706845)
               

               
               1-266, gnl|rheMac2|chr6 (11183789-11184102)
               

               
               1-266, gnl|rn3|chr2 (82781283-82781031)
               


               
               274-429, gnl|bosTau2|chr5 (42727185-42727031)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tra (0.123092)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.123092)

	1-266, gnl\|bosTau2\|chr20 (35594690-35594426)
	1-266, gnl\|canFam2\|chr34 (6188358-6188058)
	1-266, gnl\|dasNov1\|scaffold_18416 (42140-42459)
	1-266, gnl\|echTel1\|scaffold_201033 (4230-4545)
	1-266, gnl\|hg17\|chr5 (11301141-11301448)
	1-266, gnl\|Hg17\|chr5 (11301218-11301485)
	1-266, gnl\|mm7\|chr15 (30872424-30872200)
	1-266, gnl\|oryCun1\|scaffold_213931 (127380-127691)
	1-266, gnl\|panTro1\|chr4 (11706538-11706845)
	1-266, gnl\|rheMac2\|chr6 (11183789-11184102)
	1-266, gnl\|rn3\|chr2 (82781283-82781031)

	274-429, gnl\|bosTau2\|chr5 (42727185-42727031)