Non-Coding RNA Search

rtra32_n13.y1

Sequence:


               
               TTAAGTCTTCTTTTAATTAAGTTGATTCATTTGCCCTGGAAAGATTTCCTGATTCAGCTA
GTATATTTATGTATAAACTACTCTGGAAACACCTGGCAATTTTTCTGAGTGACAATAAGG
AAACGTAGTCTGAAAATTATGGTTTAATTTGCTCCCTCCCCCATGATGTCTTACCTTTTT
AAAAATGGGTAAGATTTACACGAGAGGCTTTGTATTTTGCCCATCGTGCTAATCCTGTTT
TACAACAGAAATATGTATCAACAATACCTAATAATTTCCCTTTATGTATTTTTAGAACAC
TTGTTTCCAATGGACAATTGAATCATTCCTTGGCAGATGGGAAATCATCTAATTGCATGT
TTTTATTTATTGTGAATTTTCAGGTAGGCTCCAGGAGAGATTAGTGAGCATATATTAAAA
GTTAGAGTAAACGGTATCTTAATGACTGTTTTCAGGCGTTACCGCCCTTGGGTTTCATCA
CAGCTGACGGGGGTGCGGGGGTGGTGGCGGTGGCGATGGAAGGAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAGTCTTCTTTTAATTAAGTTGATTCATTTGCCCTGGAAAGATTTCCTGATTCAGCTA
GTATATTTATGTATAAACTACTCTGGAAACACCTGGCAATTTTTCTGAGTGACAATAAGG
AAACGTAGTCTGAAAATTATGGTTTAATTTGCTCCCTCCCCCATGATGTCTTACCTTTTT
AAAAATGGGTAAGATTTACACGAGAGGCTTTGTATTTTGCCCATCGTGCTAATCCTGTTT
TACAACAGAAATATGTATCAACAATACCTAATAATTTCCCTTTATGTATTTTTAGAACAC
TTGTTTCCAATGGACAATTGAATCATTCCTTGGCAGATGGGAAATCATCTAATTGCATGT
TTTTATTTATTGTGAATTTTCAGGTAGGCTCCAGGAGAGATTAGTGAGCATATATTAAAA
GTTAGAGTAAACGGTATCTTAATGACTGTTTTCAGGCGTTACCGCCCTTGGGTTTCATCA
CAGCTGACGGGGGTGCGGGGGTGGTGGCGGTGGCGATGGAAGGAGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               157-263, + strand, RNAz p=0.936921

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-263, + strand, RNAz p=0.936921

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-480, gnl|bosTau2|chr19 (4059767-4059279)
               

               
               3-480, gnl|Hg17|chr17 (52975937-52976420)
               

               
               3-480, gnl|Mm7|chr11 (88536248-88535808)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-480, gnl|bosTau2|chr19 (4059767-4059279)
               

               
               3-480, gnl|Hg17|chr17 (52975937-52976420)
               

               
               3-480, gnl|Mm7|chr11 (88536248-88535808)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tra (0.123092)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.123092)

	3-480, gnl\|bosTau2\|chr19 (4059767-4059279)
	3-480, gnl\|Hg17\|chr17 (52975937-52976420)
	3-480, gnl\|Mm7\|chr11 (88536248-88535808)