Non-Coding RNA Search

rtra33_j11.y1

Sequence:


               
               GGCTACAGCTGGTCTGAAATAGGAAGACTGTAAATTTATTTAAATGTTCAGCATGACCCA
CTGGCTTCACTTTTTCCATCATGATGAATGAAAATGTAGACAACAGAATGTTTCACAAGA
CAGACAAAGAGAATACGGAAAATGCAGAACCAGGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTACAGCTGGTCTGAAATAGGAAGACTGTAAATTTATTTAAATGTTCAGCATGACCCA
CTGGCTTCACTTTTTCCATCATGATGAATGAAAATGTAGACAACAGAATGTTTCACAAGA
CAGACAAAGAGAATACGGAAAATGCAGAACCAGGAAC

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-156, gnl|bosTau2|chr29 (12905452-12905292)
               

               
               1-156, gnl|canFam2|chr21 (23485793-23485564)
               

               
               1-156, gnl|dasNov1|scaffold_3179 (152741-152945)
               

               
               1-156, gnl|echTel1|scaffold_313411 (9152-8962)
               

               
               1-156, gnl|hg17|chr11 (77738697-77738931)
               

               
               1-156, gnl|Hg17|chr11 (77738857-77738705)
               

               
               1-156, gnl|loxAfr1|scaffold_53975 (12313-12073)
               

               
               1-156, gnl|mm7|chr7 (93188615-93188388)
               

               
               1-156, gnl|Mm7|chr7 (93188462-93188605)
               

               
               1-156, gnl|oryCun1|scaffold_200838 (87824-87602)
               

               
               1-156, gnl|panTro1|chr9 (79051738-79051969)
               

               
               1-156, gnl|rheMac2|chr14 (76549548-76549780)
               

               
               1-156, gnl|rn3|chr1 (154498298-154498071)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-156, gnl|bosTau2|chr29 (12905452-12905292)
               

               
               1-156, gnl|canFam2|chr21 (23485793-23485564)
               

               
               1-156, gnl|dasNov1|scaffold_3179 (152741-152945)
               

               
               1-156, gnl|echTel1|scaffold_313411 (9152-8962)
               

               
               1-156, gnl|hg17|chr11 (77738697-77738931)
               

               
               1-156, gnl|Hg17|chr11 (77738857-77738705)
               

               
               1-156, gnl|loxAfr1|scaffold_53975 (12313-12073)
               

               
               1-156, gnl|mm7|chr7 (93188615-93188388)
               

               
               1-156, gnl|Mm7|chr7 (93188462-93188605)
               

               
               1-156, gnl|oryCun1|scaffold_200838 (87824-87602)
               

               
               1-156, gnl|panTro1|chr9 (79051738-79051969)
               

               
               1-156, gnl|rheMac2|chr14 (76549548-76549780)
               

               
               1-156, gnl|rn3|chr1 (154498298-154498071)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tra (0.123092)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.123092)

	1-156, gnl\|bosTau2\|chr29 (12905452-12905292)
	1-156, gnl\|canFam2\|chr21 (23485793-23485564)
	1-156, gnl\|dasNov1\|scaffold_3179 (152741-152945)
	1-156, gnl\|echTel1\|scaffold_313411 (9152-8962)
	1-156, gnl\|hg17\|chr11 (77738697-77738931)
	1-156, gnl\|Hg17\|chr11 (77738857-77738705)
	1-156, gnl\|loxAfr1\|scaffold_53975 (12313-12073)
	1-156, gnl\|mm7\|chr7 (93188615-93188388)
	1-156, gnl\|Mm7\|chr7 (93188462-93188605)
	1-156, gnl\|oryCun1\|scaffold_200838 (87824-87602)
	1-156, gnl\|panTro1\|chr9 (79051738-79051969)
	1-156, gnl\|rheMac2\|chr14 (76549548-76549780)
	1-156, gnl\|rn3\|chr1 (154498298-154498071)