Non-Coding RNA Search

rtra34_j24.y1

Sequence:


               
               GAACACCTTTGCGTTATTTGTTGTCTGTTCATGTAAGTTTATCATACGTCTTCTTAAAAA
CTTAGATTTTAGATTTATGGTTGTCAATAAGTTCAAGTTTATGTGGGAAGTTAAAATTAT
TTTGAAAATGCTTGGCAAAATATGGATGCATTTCAAATGTTAAGATCCACTGTACTATGG
AAAAAGAGACATTAGTCAAACTGGACAACTTATGAAGGCATGAAATTTTAGAAACGAAAC
TTTGTCCATGAGATGACATTGAAACCATTTACAACCCATTGTGAAGTTAAACATGTTGGG
TAGCAATTGTGTCCTATAGATGTTTATAATCTGCATAATCTTCTAAGTAAAATGAATCCT
TTTTTGGGGAAAACTATTCTTAAATTTGATACCATTACTGCAGTGACACAGTTCACTAGA
GTGGCTCTACCATGTGCATTTAAGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACACCTTTGCGTTATTTGTTGTCTGTTCATGTAAGTTTATCATACGTCTTCTTAAAAA
CTTAGATTTTAGATTTATGGTTGTCAATAAGTTCAAGTTTATGTGGGAAGTTAAAATTAT
TTTGAAAATGCTTGGCAAAATATGGATGCATTTCAAATGTTAAGATCCACTGTACTATGG
AAAAAGAGACATTAGTCAAACTGGACAACTTATGAAGGCATGAAATTTTAGAAACGAAAC
TTTGTCCATGAGATGACATTGAAACCATTTACAACCCATTGTGAAGTTAAACATGTTGGG
TAGCAATTGTGTCCTATAGATGTTTATAATCTGCATAATCTTCTAAGTAAAATGAATCCT
TTTTTGGGGAAAACTATTCTTAAATTTGATACCATTACTGCAGTGACACAGTTCACTAGA
GTGGCTCTACCATGTGCATTTAAGTTT

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               21-390, gnl|bosTau2|chr9 (52650311-52649944)
               

               
               21-390, gnl|canFam2|chr1 (45002591-45002886)
               

               
               21-390, gnl|echTel1|scaffold_96490 (487-811)
               

               
               21-390, gnl|hg17|chr6 (152070329-152070625)
               

               
               21-390, gnl|Hg17|chr6 (152070381-152070743)
               

               
               21-390, gnl|loxAfr1|scaffold_74823 (6713-6432)
               

               
               21-390, gnl|mm7|chr10 (5767507-5767201)
               

               
               21-390, gnl|Mm7|chr10 (5767453-5767100)
               

               
               21-390, gnl|monDom2|scaffold_0 (54156751-54156425)
               

               
               21-390, gnl|oryCun1|scaffold_194230 (7709-7433)
               

               
               21-390, gnl|panTro1|chr5 (155585257-155585553)
               

               
               21-390, gnl|rheMac2|chr4 (111412274-111411977)
               

               
               21-390, gnl|rn3|chr1 (35323174-35323469)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-390, gnl|bosTau2|chr9 (52650311-52649944)
               

               
               21-390, gnl|canFam2|chr1 (45002591-45002886)
               

               
               21-390, gnl|echTel1|scaffold_96490 (487-811)
               

               
               21-390, gnl|hg17|chr6 (152070329-152070625)
               

               
               21-390, gnl|Hg17|chr6 (152070381-152070743)
               

               
               21-390, gnl|loxAfr1|scaffold_74823 (6713-6432)
               

               
               21-390, gnl|mm7|chr10 (5767507-5767201)
               

               
               21-390, gnl|Mm7|chr10 (5767453-5767100)
               

               
               21-390, gnl|monDom2|scaffold_0 (54156751-54156425)
               

               
               21-390, gnl|oryCun1|scaffold_194230 (7709-7433)
               

               
               21-390, gnl|panTro1|chr5 (155585257-155585553)
               

               
               21-390, gnl|rheMac2|chr4 (111412274-111411977)
               

               
               21-390, gnl|rn3|chr1 (35323174-35323469)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tra (0.123092)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.123092)

	21-390, gnl\|bosTau2\|chr9 (52650311-52649944)
	21-390, gnl\|canFam2\|chr1 (45002591-45002886)
	21-390, gnl\|echTel1\|scaffold_96490 (487-811)
	21-390, gnl\|hg17\|chr6 (152070329-152070625)
	21-390, gnl\|Hg17\|chr6 (152070381-152070743)
	21-390, gnl\|loxAfr1\|scaffold_74823 (6713-6432)
	21-390, gnl\|mm7\|chr10 (5767507-5767201)
	21-390, gnl\|Mm7\|chr10 (5767453-5767100)
	21-390, gnl\|monDom2\|scaffold_0 (54156751-54156425)
	21-390, gnl\|oryCun1\|scaffold_194230 (7709-7433)
	21-390, gnl\|panTro1\|chr5 (155585257-155585553)
	21-390, gnl\|rheMac2\|chr4 (111412274-111411977)
	21-390, gnl\|rn3\|chr1 (35323174-35323469)