Non-Coding RNA Search

ruio07_g3.y1

Sequence:


               
               GCGTGCTCTTGGCGGGGCAGACTTCTCTTTGAGCTGCTAGAAGCTTCAACAAGTAAACCC
AACCCAGGAGTGGAGACTCTGCCGGGCTCCAGTGCCTGCGCCAGCAGCGTAGAGACCTGG
CCAAGAATTCCCACCTGAGAGCCTTGCTACGCGCTTATCAGCCCAGGTGCGCCTTGTAGT
TCTGGCACTTAGAGGTCTGATGCTTGAGAACTCCGTAAATCCTTTCTTTAAGCAAAGCCC
TGGGTTGGCAGCTGGGGATTTGGCTAGAACAGCCACACCTCGGAAAATGTGTGTGTGTGT
GTGTGTGTGTGTGTATACACACGCGCGCGCCCACGTGCGTCCGCGACAAGGGCCAGAGGG
TACCCCAAAGTGTGGTGGAGTATAAGTTGAAAAAAAGATATAAAGTTTGCCAAATGTTGG
CATCTGTTTTTTCCCCGTGGTACCTCGTGTTTGTTTACTTACTGGTTAAAGGGGAAAATA
AATGACTAGGATGCTTTCTCGGCTAAACATCGGATCTGGAAGGAAACAACATAGCTGGCG
TTCTGTTTCTGGTGATTTGTTAACGTGGGGTTTCATCCATCCAAGTTGCAGTGATTGTAC
ATACACATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGTGCTCTTGGCGGGGCAGACTTCTCTTTGAGCTGCTAGAAGCTTCAACAAGTAAACCC
AACCCAGGAGTGGAGACTCTGCCGGGCTCCAGTGCCTGCGCCAGCAGCGTAGAGACCTGG
CCAAGAATTCCCACCTGAGAGCCTTGCTACGCGCTTATCAGCCCAGGTGCGCCTTGTAGT
TCTGGCACTTAGAGGTCTGATGCTTGAGAACTCCGTAAATCCTTTCTTTAAGCAAAGCCC
TGGGTTGGCAGCTGGGGATTTGGCTAGAACAGCCACACCTCGGAAAATGTGTGTGTGTGT
GTGTGTGTGTGTGTATACACACGCGCGCGCCCACGTGCGTCCGCGACAAGGGCCAGAGGG
TACCCCAAAGTGTGGTGGAGTATAAGTTGAAAAAAAGATATAAAGTTTGCCAAATGTTGG
CATCTGTTTTTTCCCCGTGGTACCTCGTGTTTGTTTACTTACTGGTTAAAGGGGAAAATA
AATGACTAGGATGCTTTCTCGGCTAAACATCGGATCTGGAAGGAAACAACATAGCTGGCG
TTCTGTTTCTGGTGATTTGTTAACGTGGGGTTTCATCCATCCAAGTTGCAGTGATTGTAC
ATACACATTA

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

Help | Less info


               
               1-302, gnl|bosTau2|chr15 (28081724-28082024)
               

               
               1-302, gnl|Hg17|chr11 (10280807-10280467)
               

               
               1-302, gnl|Mm7|chr7 (106540658-106540337)
               


               
               335-607, gnl|bosTau2|chr15 (28082019-28082283)
               

               
               335-607, gnl|canFam2|chr21 (36657051-36657230)
               

               
               335-607, gnl|dasNov1|scaffold_13270 (6497-6678)
               

               
               335-607, gnl|echTel1|scaffold_312429 (316302-316144)
               

               
               335-607, gnl|hg17|chr11 (10280191-10280372)
               

               
               335-607, gnl|Hg17|chr11 (10280472-10280198)
               

               
               335-607, gnl|loxAfr1|scaffold_65632 (3810-3992)
               

               
               335-607, gnl|mm7|chr7 (106540082-106540241)
               

               
               335-607, gnl|Mm7|chr7 (106540342-106540089)
               

               
               335-607, gnl|oryCun1|scaffold_174294 (48503-48286)
               

               
               335-607, gnl|panTro1|chr9 (10522437-10522618)
               

               
               335-607, gnl|rn3|chr1 (168488029-168488188)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-302, gnl|bosTau2|chr15 (28081724-28082024)
               

               
               1-302, gnl|Hg17|chr11 (10280807-10280467)
               

               
               1-302, gnl|Mm7|chr7 (106540658-106540337)
               


               
               335-607, gnl|bosTau2|chr15 (28082019-28082283)
               

               
               335-607, gnl|canFam2|chr21 (36657051-36657230)
               

               
               335-607, gnl|dasNov1|scaffold_13270 (6497-6678)
               

               
               335-607, gnl|echTel1|scaffold_312429 (316302-316144)
               

               
               335-607, gnl|hg17|chr11 (10280191-10280372)
               

               
               335-607, gnl|Hg17|chr11 (10280472-10280198)
               

               
               335-607, gnl|loxAfr1|scaffold_65632 (3810-3992)
               

               
               335-607, gnl|mm7|chr7 (106540082-106540241)
               

               
               335-607, gnl|Mm7|chr7 (106540342-106540089)
               

               
               335-607, gnl|oryCun1|scaffold_174294 (48503-48286)
               

               
               335-607, gnl|panTro1|chr9 (10522437-10522618)
               

               
               335-607, gnl|rn3|chr1 (168488029-168488188)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               kid (0.129735)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)

	1-302, gnl\|bosTau2\|chr15 (28081724-28082024)
	1-302, gnl\|Hg17\|chr11 (10280807-10280467)
	1-302, gnl\|Mm7\|chr7 (106540658-106540337)

	335-607, gnl\|bosTau2\|chr15 (28082019-28082283)
	335-607, gnl\|canFam2\|chr21 (36657051-36657230)
	335-607, gnl\|dasNov1\|scaffold_13270 (6497-6678)
	335-607, gnl\|echTel1\|scaffold_312429 (316302-316144)
	335-607, gnl\|hg17\|chr11 (10280191-10280372)
	335-607, gnl\|Hg17\|chr11 (10280472-10280198)
	335-607, gnl\|loxAfr1\|scaffold_65632 (3810-3992)
	335-607, gnl\|mm7\|chr7 (106540082-106540241)
	335-607, gnl\|Mm7\|chr7 (106540342-106540089)
	335-607, gnl\|oryCun1\|scaffold_174294 (48503-48286)
	335-607, gnl\|panTro1\|chr9 (10522437-10522618)
	335-607, gnl\|rn3\|chr1 (168488029-168488188)