Non-Coding RNA Search

ruio08_p17.y1

Sequence:


               
               CACGAACATGTACTTCAAACAGTCCTAAGTGATAAAAACTTACTGGCATCAGCCATGAGG
AAGTCGAAGTTTAAAATTTGGCCTTCCAGTATGCTGCCAAGACTACCTACTGCCTTTATT
GGAAAAGAGAGTGAGGAAGCCAGAGAAGGTAATGATGTCTGGTATGATTAAAAGTAAAAG
TAATATGTTCTTCCAACCATTTTAAAGCATAAATTAAAATGCTGCTTCTATTTGTCCTTT
TCAGAAGACTTGTTATAGCTCACATTTAATACCTGGTTAACAATTAACCTGAATGCACTA
CACTAGATAAATATTGATGATACCGTCATTGGACACGTGGGCTTTTCCCCTGTAATTATA
TCCTTGTATTAACATATGGATGCCGGTGTTCTGGTATGGGTGTTGAATAAAAGCAAACAT
TTTGCTCACTGTGTCACATGGTAGAAAACTAAAGCACTGGGTAAAATAGTAGAGAAGAAT
AGAGGGCCTTCCATGCACGTGAGACCGAATCACACAGTTTGACTCTGGACTCTGCAAACC
CTTTACAAAGCCCTGCAGGGAACCACCAAGGTCTCTGGAGCTTTTCAAAAATCCCCACAA
ACCACATAAGCAAGAGCCAGTGTATTTCAGCTGATGTCACTAAAGCTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACGAACATGTACTTCAAACAGTCCTAAGTGATAAAAACTTACTGGCATCAGCCATGAGG
AAGTCGAAGTTTAAAATTTGGCCTTCCAGTATGCTGCCAAGACTACCTACTGCCTTTATT
GGAAAAGAGAGTGAGGAAGCCAGAGAAGGTAATGATGTCTGGTATGATTAAAAGTAAAAG
TAATATGTTCTTCCAACCATTTTAAAGCATAAATTAAAATGCTGCTTCTATTTGTCCTTT
TCAGAAGACTTGTTATAGCTCACATTTAATACCTGGTTAACAATTAACCTGAATGCACTA
CACTAGATAAATATTGATGATACCGTCATTGGACACGTGGGCTTTTCCCCTGTAATTATA
TCCTTGTATTAACATATGGATGCCGGTGTTCTGGTATGGGTGTTGAATAAAAGCAAACAT
TTTGCTCACTGTGTCACATGGTAGAAAACTAAAGCACTGGGTAAAATAGTAGAGAAGAAT
AGAGGGCCTTCCATGCACGTGAGACCGAATCACACAGTTTGACTCTGGACTCTGCAAACC
CTTTACAAAGCCCTGCAGGGAACCACCAAGGTCTCTGGAGCTTTTCAAAAATCCCCACAA
ACCACATAAGCAAGAGCCAGTGTATTTCAGCTGATGTCACTAAAGCTGAC

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               4-650, gnl|bosTau2|chr4 (24802808-24803453)
               

               
               4-650, gnl|canFam2|chr14 (59562440-59562991)
               

               
               4-650, gnl|dasNov1|scaffold_127420 (3806-3297)
               

               
               4-650, gnl|echTel1|scaffold_197862 (12033-12541)
               

               
               4-650, gnl|hg17|chr7 (117043377-117043908)
               

               
               4-650, gnl|Hg17|chr7 (117044092-117043457)
               

               
               4-650, gnl|loxAfr1|scaffold_1434 (155140-155677)
               

               
               4-650, gnl|mm7|chr6 (18387301-18387826)
               

               
               4-650, gnl|Mm7|chr6 (18387994-18387381)
               

               
               4-650, gnl|monDom2|scaffold_22 (30958761-30958218)
               

               
               4-650, gnl|oryCun1|scaffold_198552 (45982-45420)
               

               
               4-650, gnl|panTro1|chr6 (119327027-119327559)
               

               
               4-650, gnl|rheMac2|chr3 (155133777-155134317)
               

               
               4-650, gnl|rn3|chr4 (44423065-44423463)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-650, gnl|bosTau2|chr4 (24802808-24803453)
               

               
               4-650, gnl|canFam2|chr14 (59562440-59562991)
               

               
               4-650, gnl|dasNov1|scaffold_127420 (3806-3297)
               

               
               4-650, gnl|echTel1|scaffold_197862 (12033-12541)
               

               
               4-650, gnl|hg17|chr7 (117043377-117043908)
               

               
               4-650, gnl|Hg17|chr7 (117044092-117043457)
               

               
               4-650, gnl|loxAfr1|scaffold_1434 (155140-155677)
               

               
               4-650, gnl|mm7|chr6 (18387301-18387826)
               

               
               4-650, gnl|Mm7|chr6 (18387994-18387381)
               

               
               4-650, gnl|monDom2|scaffold_22 (30958761-30958218)
               

               
               4-650, gnl|oryCun1|scaffold_198552 (45982-45420)
               

               
               4-650, gnl|panTro1|chr6 (119327027-119327559)
               

               
               4-650, gnl|rheMac2|chr3 (155133777-155134317)
               

               
               4-650, gnl|rn3|chr4 (44423065-44423463)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               kid (0.129735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)

	4-650, gnl\|bosTau2\|chr4 (24802808-24803453)
	4-650, gnl\|canFam2\|chr14 (59562440-59562991)
	4-650, gnl\|dasNov1\|scaffold_127420 (3806-3297)
	4-650, gnl\|echTel1\|scaffold_197862 (12033-12541)
	4-650, gnl\|hg17\|chr7 (117043377-117043908)
	4-650, gnl\|Hg17\|chr7 (117044092-117043457)
	4-650, gnl\|loxAfr1\|scaffold_1434 (155140-155677)
	4-650, gnl\|mm7\|chr6 (18387301-18387826)
	4-650, gnl\|Mm7\|chr6 (18387994-18387381)
	4-650, gnl\|monDom2\|scaffold_22 (30958761-30958218)
	4-650, gnl\|oryCun1\|scaffold_198552 (45982-45420)
	4-650, gnl\|panTro1\|chr6 (119327027-119327559)
	4-650, gnl\|rheMac2\|chr3 (155133777-155134317)
	4-650, gnl\|rn3\|chr4 (44423065-44423463)