Non-Coding RNA Search

ruio15_b9.y1

Sequence:


               
               GAGTTCTTCAGATTATTTTTTATTAATATTAGTGTTTAGCAATTTATTATTTAAAGTGAT
GCCAGTAATAGCATCCTTCTGTTTATTTTTAAATATTTTTTTATGAAAAGGGACTTAAAA
AATAACCATGATCATTTAAATTACTTACAATTACCCAATCTTAGTAAAATGTAATTTTAA
GGAAAGCTATCTAGTCTTTAAATGTAGAATGATTTAAAATATGTAGGCATTTAATAAATT
ATCTCTGTTTTTGGATGCTGCATTTCATTTGAAATATAATTTTTCCAAAGTTTCTGGCCA
GGTATTATCTTGTCTTCAAACAAGTCTGAAAGCAATGAAAACCTCACAGGAAATGTTTAT
ATACATTCACATGTTTATTTAAGAGGTATATATATTTCTCTTAATACCTGAAACGTTTTA
AAAGAAAAAGCAGTATTCACTTCAAATCGTAAACATATAGAAAATTCTGATATCTTAGGT
CAGAAATATGTTTATGATCTTACTTTTAAGTGGTACTGTTACCCATTGGGCATTAGTTCT
CAAATTTTAGAATGTGGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTTCTTCAGATTATTTTTTATTAATATTAGTGTTTAGCAATTTATTATTTAAAGTGAT
GCCAGTAATAGCATCCTTCTGTTTATTTTTAAATATTTTTTTATGAAAAGGGACTTAAAA
AATAACCATGATCATTTAAATTACTTACAATTACCCAATCTTAGTAAAATGTAATTTTAA
GGAAAGCTATCTAGTCTTTAAATGTAGAATGATTTAAAATATGTAGGCATTTAATAAATT
ATCTCTGTTTTTGGATGCTGCATTTCATTTGAAATATAATTTTTCCAAAGTTTCTGGCCA
GGTATTATCTTGTCTTCAAACAAGTCTGAAAGCAATGAAAACCTCACAGGAAATGTTTAT
ATACATTCACATGTTTATTTAAGAGGTATATATATTTCTCTTAATACCTGAAACGTTTTA
AAAGAAAAAGCAGTATTCACTTCAAATCGTAAACATATAGAAAATTCTGATATCTTAGGT
CAGAAATATGTTTATGATCTTACTTTTAAGTGGTACTGTTACCCATTGGGCATTAGTTCT
CAAATTTTAGAATGTGGAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               421-540, - strand, RNAz p=0.996775

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               421-540, - strand, RNAz p=0.996775

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-560, gnl|bosTau2|chr1 (62719625-62719071)
               

               
               1-560, gnl|canFam2|chr34 (37843829-37844242)
               

               
               1-560, gnl|echTel1|scaffold_314592 (50080-49665)
               

               
               1-560, gnl|hg17|chr3 (171505065-171505501)
               

               
               1-560, gnl|Hg17|chr3 (171505149-171505705)
               

               
               1-560, gnl|mm7|chr3 (30863287-30863689)
               

               
               1-560, gnl|monDom2|scaffold_52 (1807719-1807293)
               

               
               1-560, gnl|oryCun1|scaffold_212926 (39857-40284)
               

               
               1-560, gnl|panTro1|chr2 (174997226-174997667)
               

               
               1-560, gnl|rheMac2|chr2 (116705910-116705475)
               

               
               1-560, gnl|rn3|chr2 (116686091-116685687)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-560, gnl|bosTau2|chr1 (62719625-62719071)
               

               
               1-560, gnl|canFam2|chr34 (37843829-37844242)
               

               
               1-560, gnl|echTel1|scaffold_314592 (50080-49665)
               

               
               1-560, gnl|hg17|chr3 (171505065-171505501)
               

               
               1-560, gnl|Hg17|chr3 (171505149-171505705)
               

               
               1-560, gnl|mm7|chr3 (30863287-30863689)
               

               
               1-560, gnl|monDom2|scaffold_52 (1807719-1807293)
               

               
               1-560, gnl|oryCun1|scaffold_212926 (39857-40284)
               

               
               1-560, gnl|panTro1|chr2 (174997226-174997667)
               

               
               1-560, gnl|rheMac2|chr2 (116705910-116705475)
               

               
               1-560, gnl|rn3|chr2 (116686091-116685687)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               kid (0.129735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)

	1-560, gnl\|bosTau2\|chr1 (62719625-62719071)
	1-560, gnl\|canFam2\|chr34 (37843829-37844242)
	1-560, gnl\|echTel1\|scaffold_314592 (50080-49665)
	1-560, gnl\|hg17\|chr3 (171505065-171505501)
	1-560, gnl\|Hg17\|chr3 (171505149-171505705)
	1-560, gnl\|mm7\|chr3 (30863287-30863689)
	1-560, gnl\|monDom2\|scaffold_52 (1807719-1807293)
	1-560, gnl\|oryCun1\|scaffold_212926 (39857-40284)
	1-560, gnl\|panTro1\|chr2 (174997226-174997667)
	1-560, gnl\|rheMac2\|chr2 (116705910-116705475)
	1-560, gnl\|rn3\|chr2 (116686091-116685687)