Non-Coding RNA Search

ruio18_d21.y1

Sequence:


               
               GAAAAATGTTTCGGTTTTCTTTTTTCCTACTGAACGTGGCAAACTCGTGTTCCCTCAACG
CTGAACTCAGAGGTCTCCTGGAACAGCGTTTTATTACAGACATAACAACTCATGTTCAGC
GGCAACAGCGACGATGGCGAACATGCTTTATACCAGGAACAAAAAGAGGCATAATAAGGG
TGGCATCATGATGAGTAGCCTTGCAACACAAACCTAAGAAATGAGGGTCCTGGGAATCAT
TTTTCTTCAACCCGCGTGTTGTTCCACATGAGCGTTGAAGGGTGACACTAAAATGGACAC
CACGCTGGTATCTCCCTAAAACAGGTGCTGCAGTCTCTCATGGTGATGACAGAATGTTTA
CTCATTAAAATTTGCTTGAACTACTTCCAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAATGTTTCGGTTTTCTTTTTTCCTACTGAACGTGGCAAACTCGTGTTCCCTCAACG
CTGAACTCAGAGGTCTCCTGGAACAGCGTTTTATTACAGACATAACAACTCATGTTCAGC
GGCAACAGCGACGATGGCGAACATGCTTTATACCAGGAACAAAAAGAGGCATAATAAGGG
TGGCATCATGATGAGTAGCCTTGCAACACAAACCTAAGAAATGAGGGTCCTGGGAATCAT
TTTTCTTCAACCCGCGTGTTGTTCCACATGAGCGTTGAAGGGTGACACTAAAATGGACAC
CACGCTGGTATCTCCCTAAAACAGGTGCTGCAGTCTCTCATGGTGATGACAGAATGTTTA
CTCATTAAAATTTGCTTGAACTACTTCCAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               23-124, + strand, RNAz p=0.653923

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               23-124, + strand, RNAz p=0.653923

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               2-377, gnl|bosTau2|chr29 (284913-284542)
               

               
               2-377, gnl|canFam2|chr21 (10337790-10337376)
               

               
               2-377, gnl|echTel1|scaffold_301268 (12249-11847)
               

               
               2-377, gnl|hg17|chr11 (92694843-92695225)
               

               
               2-377, gnl|Hg17|chr11 (92694928-92695291)
               

               
               2-377, gnl|mm7|chr9 (15478234-15477890)
               

               
               2-377, gnl|Mm7|chr9 (15478134-15477834)
               

               
               2-377, gnl|monDom2|scaffold_15 (4907069-4906665)
               

               
               2-377, gnl|oryCun1|scaffold_211315 (94149-94557)
               

               
               2-377, gnl|panTro1|chr9 (94593264-94593646)
               

               
               2-377, gnl|rheMac2|chr14 (91882530-91882915)
               

               
               2-377, gnl|rn3|chr8 (12443661-12443266)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-377, gnl|bosTau2|chr29 (284913-284542)
               

               
               2-377, gnl|canFam2|chr21 (10337790-10337376)
               

               
               2-377, gnl|echTel1|scaffold_301268 (12249-11847)
               

               
               2-377, gnl|hg17|chr11 (92694843-92695225)
               

               
               2-377, gnl|Hg17|chr11 (92694928-92695291)
               

               
               2-377, gnl|mm7|chr9 (15478234-15477890)
               

               
               2-377, gnl|Mm7|chr9 (15478134-15477834)
               

               
               2-377, gnl|monDom2|scaffold_15 (4907069-4906665)
               

               
               2-377, gnl|oryCun1|scaffold_211315 (94149-94557)
               

               
               2-377, gnl|panTro1|chr9 (94593264-94593646)
               

               
               2-377, gnl|rheMac2|chr14 (91882530-91882915)
               

               
               2-377, gnl|rn3|chr8 (12443661-12443266)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               kid (0.129735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)

	2-377, gnl\|bosTau2\|chr29 (284913-284542)
	2-377, gnl\|canFam2\|chr21 (10337790-10337376)
	2-377, gnl\|echTel1\|scaffold_301268 (12249-11847)
	2-377, gnl\|hg17\|chr11 (92694843-92695225)
	2-377, gnl\|Hg17\|chr11 (92694928-92695291)
	2-377, gnl\|mm7\|chr9 (15478234-15477890)
	2-377, gnl\|Mm7\|chr9 (15478134-15477834)
	2-377, gnl\|monDom2\|scaffold_15 (4907069-4906665)
	2-377, gnl\|oryCun1\|scaffold_211315 (94149-94557)
	2-377, gnl\|panTro1\|chr9 (94593264-94593646)
	2-377, gnl\|rheMac2\|chr14 (91882530-91882915)
	2-377, gnl\|rn3\|chr8 (12443661-12443266)