Non-Coding RNA Search

ruio20_g3.y1

Sequence:


               
               GCTCAAGTTCACCTACCTGGAGCAGGCGTTCGATCGCCTGTCCGAGGCCGGCTTCCACAT
GGTGGCGTGTAACTCCTCAGGCACCGCCGCCTTCGTCAACCAGTACCGCGACGACAAGAT
CTGGAGCAGCTACACCGAGTACATCTTCTTCCGACCACCGCAGAAAATAGTATCACCTAA
ACAAGAGCATGAAGATAGGAAACACGACAAAGTCACAGATAAAGGAAGTGAGAGCGGGAC
TTCCTGTAACGAGCTCTCCACTTCCAGCTGTGACAGCCACTCGGAGGCAAGCACACCCCA
GGATAACCCACCCAGTGCCCAGCAGGCGACAGCTCACCAACCTAACACCTTAACATTGGA
TCGTCCTTCCAAAAAAGCTCCTGTGCAATGGATGCCCCCACCAGACAAACGCAGAAACAG
TGAACTCTTTCAGACACTCATCAGCAAGTCCCGGGAAACAAATCTTTCCAAAAAGAAAGT
CTGTGAGAAGCTAAGTGTGGAAGAAGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCAAGTTCACCTACCTGGAGCAGGCGTTCGATCGCCTGTCCGAGGCCGGCTTCCACAT
GGTGGCGTGTAACTCCTCAGGCACCGCCGCCTTCGTCAACCAGTACCGCGACGACAAGAT
CTGGAGCAGCTACACCGAGTACATCTTCTTCCGACCACCGCAGAAAATAGTATCACCTAA
ACAAGAGCATGAAGATAGGAAACACGACAAAGTCACAGATAAAGGAAGTGAGAGCGGGAC
TTCCTGTAACGAGCTCTCCACTTCCAGCTGTGACAGCCACTCGGAGGCAAGCACACCCCA
GGATAACCCACCCAGTGCCCAGCAGGCGACAGCTCACCAACCTAACACCTTAACATTGGA
TCGTCCTTCCAAAAAAGCTCCTGTGCAATGGATGCCCCCACCAGACAAACGCAGAAACAG
TGAACTCTTTCAGACACTCATCAGCAAGTCCCGGGAAACAAATCTTTCCAAAAAGAAAGT
CTGTGAGAAGCTAAGTGTGGAAGAAGAAA

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               2-153, gnl|bosTau2|chr6 (33205031-33205182)
               

               
               2-153, gnl|canFam2|chr13 (43912632-43912910)
               

               
               2-153, gnl|danRer3|chr14 (1372150-1371872)
               

               
               2-153, gnl|dasNov1|scaffold_36847 (8955-9233)
               

               
               2-153, gnl|fr1|chrUn (123245599-123245321)
               

               
               2-153, gnl|galGal2|chr4 (68165688-68165410)
               

               
               2-153, gnl|hg17|chr4 (44290503-44290781)
               

               
               2-153, gnl|Hg17|chr4 (44290658-44290507)
               

               
               2-153, gnl|loxAfr1|scaffold_676 (92951-93229)
               

               
               2-153, gnl|mm7|chr5 (68696930-68697208)
               

               
               2-153, gnl|Mm7|chr5 (68697085-68696934)
               

               
               2-153, gnl|monDom2|scaffold_26 (10172310-10172588)
               

               
               2-153, gnl|oryCun1|scaffold_136519 (8385-8107)
               

               
               2-153, gnl|panTro1|chr3 (46999756-47000034)
               

               
               2-153, gnl|rheMac2|chr5 (39593334-39593612)
               

               
               2-153, gnl|rn3|chr14 (41326224-41325946)
               

               
               2-153, gnl|tetNig1|chr1 (1605455-1605177)
               

               
               2-153, gnl|xenTro1|scaffold_4823 (14218-13940)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-153, gnl|bosTau2|chr6 (33205031-33205182)
               

               
               2-153, gnl|canFam2|chr13 (43912632-43912910)
               

               
               2-153, gnl|danRer3|chr14 (1372150-1371872)
               

               
               2-153, gnl|dasNov1|scaffold_36847 (8955-9233)
               

               
               2-153, gnl|fr1|chrUn (123245599-123245321)
               

               
               2-153, gnl|galGal2|chr4 (68165688-68165410)
               

               
               2-153, gnl|hg17|chr4 (44290503-44290781)
               

               
               2-153, gnl|Hg17|chr4 (44290658-44290507)
               

               
               2-153, gnl|loxAfr1|scaffold_676 (92951-93229)
               

               
               2-153, gnl|mm7|chr5 (68696930-68697208)
               

               
               2-153, gnl|Mm7|chr5 (68697085-68696934)
               

               
               2-153, gnl|monDom2|scaffold_26 (10172310-10172588)
               

               
               2-153, gnl|oryCun1|scaffold_136519 (8385-8107)
               

               
               2-153, gnl|panTro1|chr3 (46999756-47000034)
               

               
               2-153, gnl|rheMac2|chr5 (39593334-39593612)
               

               
               2-153, gnl|rn3|chr14 (41326224-41325946)
               

               
               2-153, gnl|tetNig1|chr1 (1605455-1605177)
               

               
               2-153, gnl|xenTro1|scaffold_4823 (14218-13940)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               kid (0.129735)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)

	2-153, gnl\|bosTau2\|chr6 (33205031-33205182)
	2-153, gnl\|canFam2\|chr13 (43912632-43912910)
	2-153, gnl\|danRer3\|chr14 (1372150-1371872)
	2-153, gnl\|dasNov1\|scaffold_36847 (8955-9233)
	2-153, gnl\|fr1\|chrUn (123245599-123245321)
	2-153, gnl\|galGal2\|chr4 (68165688-68165410)
	2-153, gnl\|hg17\|chr4 (44290503-44290781)
	2-153, gnl\|Hg17\|chr4 (44290658-44290507)
	2-153, gnl\|loxAfr1\|scaffold_676 (92951-93229)
	2-153, gnl\|mm7\|chr5 (68696930-68697208)
	2-153, gnl\|Mm7\|chr5 (68697085-68696934)
	2-153, gnl\|monDom2\|scaffold_26 (10172310-10172588)
	2-153, gnl\|oryCun1\|scaffold_136519 (8385-8107)
	2-153, gnl\|panTro1\|chr3 (46999756-47000034)
	2-153, gnl\|rheMac2\|chr5 (39593334-39593612)
	2-153, gnl\|rn3\|chr14 (41326224-41325946)
	2-153, gnl\|tetNig1\|chr1 (1605455-1605177)
	2-153, gnl\|xenTro1\|scaffold_4823 (14218-13940)