Non-Coding RNA Search

ruio21_e16.y1

Sequence:


               
               GGGTTTTTATAAAATTTTTTACTGCTTGTCGTATACTAGAATTATATAACATTTAATGTG
ACTTGGTAGGAAGGAAAGAAGTATGAGTTCTTTAAAAATGAATTGTTACTACAGTTCAAG
AATGTGACAAGGATCTGAAGGGAAGGAGATTAGTTAATTCTTTTTCTGTTCTCTTTCCTG
AACATTTGATGACATTGGAATGAGTTCTGCTAATTTACAGATGCCAAAAAACTTTTCTAA
TGTATGTAGAAGTAATTCTCTCAACTAATTGGCATATTTTAAATGGAAAATATGTGGATG
TGCAAGGAAGCAGACCTTGGGAATTATTTTAGTCTTTTGAGCCATTATGGTATTATTTGG
CTGTTTGAATACAGTTATCTCTCAGTGTTTGATGATAAGACAAGTATAATAATATTTGGG
ATGACAGAAATGCCTGAGTAGTGGAAGCTTATTTAACCCATTAGTTGAATCTCCATTCTT
AGTAATACTCTTTTCAAAATGAATTTGAATGTCTATTTGCTGAACCTGTCATTTGTGAGG
AATGAGGGAAGGGTAGTAATAAAAATTGCATTTATTCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTTTTTATAAAATTTTTTACTGCTTGTCGTATACTAGAATTATATAACATTTAATGTG
ACTTGGTAGGAAGGAAAGAAGTATGAGTTCTTTAAAAATGAATTGTTACTACAGTTCAAG
AATGTGACAAGGATCTGAAGGGAAGGAGATTAGTTAATTCTTTTTCTGTTCTCTTTCCTG
AACATTTGATGACATTGGAATGAGTTCTGCTAATTTACAGATGCCAAAAAACTTTTCTAA
TGTATGTAGAAGTAATTCTCTCAACTAATTGGCATATTTTAAATGGAAAATATGTGGATG
TGCAAGGAAGCAGACCTTGGGAATTATTTTAGTCTTTTGAGCCATTATGGTATTATTTGG
CTGTTTGAATACAGTTATCTCTCAGTGTTTGATGATAAGACAAGTATAATAATATTTGGG
ATGACAGAAATGCCTGAGTAGTGGAAGCTTATTTAACCCATTAGTTGAATCTCCATTCTT
AGTAATACTCTTTTCAAAATGAATTTGAATGTCTATTTGCTGAACCTGTCATTTGTGAGG
AATGAGGGAAGGGTAGTAATAAAAATTGCATTTATTCAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               93-234, + strand, RNAz p=0.999811

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               93-234, + strand, RNAz p=0.999811

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               14-578, gnl|bosTau2|chr22 (8200931-8200368)
               

               
               14-578, gnl|canFam2|chr23 (9985905-9986368)
               

               
               14-578, gnl|dasNov1|scaffold_102194 (5657-6146)
               

               
               14-578, gnl|echTel1|scaffold_299015 (1386-1859)
               

               
               14-578, gnl|hg17|chr3 (37110560-37111061)
               

               
               14-578, gnl|Hg17|chr3 (37111249-37110679)
               

               
               14-578, gnl|loxAfr1|scaffold_15340 (48336-48822)
               

               
               14-578, gnl|mm7|chr9 (110888752-110888204)
               

               
               14-578, gnl|Mm7|chr9 (110888022-110888587)
               

               
               14-578, gnl|panTro1|chr2 (38217371-38217872)
               

               
               14-578, gnl|rheMac2|chr2 (99469455-99468951)
               

               
               14-578, gnl|rn3|chr8 (115597752-115597239)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-578, gnl|bosTau2|chr22 (8200931-8200368)
               

               
               14-578, gnl|canFam2|chr23 (9985905-9986368)
               

               
               14-578, gnl|dasNov1|scaffold_102194 (5657-6146)
               

               
               14-578, gnl|echTel1|scaffold_299015 (1386-1859)
               

               
               14-578, gnl|hg17|chr3 (37110560-37111061)
               

               
               14-578, gnl|Hg17|chr3 (37111249-37110679)
               

               
               14-578, gnl|loxAfr1|scaffold_15340 (48336-48822)
               

               
               14-578, gnl|mm7|chr9 (110888752-110888204)
               

               
               14-578, gnl|Mm7|chr9 (110888022-110888587)
               

               
               14-578, gnl|panTro1|chr2 (38217371-38217872)
               

               
               14-578, gnl|rheMac2|chr2 (99469455-99468951)
               

               
               14-578, gnl|rn3|chr8 (115597752-115597239)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               kid (0.129735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)

	14-578, gnl\|bosTau2\|chr22 (8200931-8200368)
	14-578, gnl\|canFam2\|chr23 (9985905-9986368)
	14-578, gnl\|dasNov1\|scaffold_102194 (5657-6146)
	14-578, gnl\|echTel1\|scaffold_299015 (1386-1859)
	14-578, gnl\|hg17\|chr3 (37110560-37111061)
	14-578, gnl\|Hg17\|chr3 (37111249-37110679)
	14-578, gnl\|loxAfr1\|scaffold_15340 (48336-48822)
	14-578, gnl\|mm7\|chr9 (110888752-110888204)
	14-578, gnl\|Mm7\|chr9 (110888022-110888587)
	14-578, gnl\|panTro1\|chr2 (38217371-38217872)
	14-578, gnl\|rheMac2\|chr2 (99469455-99468951)
	14-578, gnl\|rn3\|chr8 (115597752-115597239)