Non-Coding RNA Search

ruio22_a19.y1

Sequence:


               
               CCTCGTGCCGCTCCCAGGTTGTTTTAACTGTGCTTTTACAGCCGGAGGAAGAAAAAGAAT
GTAATTCAGGACCAAACGTTTGACAGATGATGGTGTGGTTGATGTCCCCAGCCATTGTGT
GGATTCACAAGTCACCATTCCACTTAGGTGTAGAATACGCTGCTTTTTCTCTTCCCCATA
ACCTGGAAGGCTGAGACTTCTGAAGCTCAAGCAGTGGAGACAAAAATTACCAAGTGCTCC
TCTGGAGCAGCCCTGCCTCCTCTCCCAGGGGAGCGACCCCAGCATGGAAGAGCTCGTTTA
TTGTGTGATCTCAACCTTGACATTCAGCAAAAGCTCTAACAGTAGTGGGGACCAAATGGG
TGAGCTCAGAGTGATTCTGCTTTTGCTGGGTTTCTGGGGACCCATCAGGGCAGACACTGA
ACCCGTGTGGTTTGTTCTACAAGGGCGAAGTGTGGCTTTGAGGACCTCTGGATATTAGAA
CCCATTTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCGTGCCGCTCCCAGGTTGTTTTAACTGTGCTTTTACAGCCGGAGGAAGAAAAAGAAT
GTAATTCAGGACCAAACGTTTGACAGATGATGGTGTGGTTGATGTCCCCAGCCATTGTGT
GGATTCACAAGTCACCATTCCACTTAGGTGTAGAATACGCTGCTTTTTCTCTTCCCCATA
ACCTGGAAGGCTGAGACTTCTGAAGCTCAAGCAGTGGAGACAAAAATTACCAAGTGCTCC
TCTGGAGCAGCCCTGCCTCCTCTCCCAGGGGAGCGACCCCAGCATGGAAGAGCTCGTTTA
TTGTGTGATCTCAACCTTGACATTCAGCAAAAGCTCTAACAGTAGTGGGGACCAAATGGG
TGAGCTCAGAGTGATTCTGCTTTTGCTGGGTTTCTGGGGACCCATCAGGGCAGACACTGA
ACCCGTGTGGTTTGTTCTACAAGGGCGAAGTGTGGCTTTGAGGACCTCTGGATATTAGAA
CCCATTTCCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               199-295, - strand, RNAz p=0.897164
               

               
               308-421, + strand, RNAz p=0.987811

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               199-295, - strand, RNAz p=0.897164
               

               
               308-421, + strand, RNAz p=0.987811

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014157, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014157, +

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               8-421, gnl|bosTau2|chr18 (23023440-23023838)
               

               
               8-421, gnl|canFam2|chr2 (61209790-61209295)
               

               
               8-421, gnl|dasNov1|scaffold_35023 (9077-9473)
               

               
               8-421, gnl|echTel1|scaffold_223623 (2157-1696)
               

               
               8-421, gnl|hg17|chr16 (56874097-56874593)
               

               
               8-421, gnl|Hg17|chr16 (56874192-56874592)
               

               
               8-421, gnl|loxAfr1|scaffold_8201 (28778-28293)
               

               
               8-421, gnl|mm7|chr8 (94150660-94151179)
               

               
               8-421, gnl|oryCun1|scaffold_128285 (1428-927)
               

               
               8-421, gnl|panTro1|chr18_random (32485836-32485340)
               

               
               8-421, gnl|rheMac2|chr20 (56632175-56632658)
               

               
               8-421, gnl|rn3|chr19 (9957215-9956706)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-421, gnl|bosTau2|chr18 (23023440-23023838)
               

               
               8-421, gnl|canFam2|chr2 (61209790-61209295)
               

               
               8-421, gnl|dasNov1|scaffold_35023 (9077-9473)
               

               
               8-421, gnl|echTel1|scaffold_223623 (2157-1696)
               

               
               8-421, gnl|hg17|chr16 (56874097-56874593)
               

               
               8-421, gnl|Hg17|chr16 (56874192-56874592)
               

               
               8-421, gnl|loxAfr1|scaffold_8201 (28778-28293)
               

               
               8-421, gnl|mm7|chr8 (94150660-94151179)
               

               
               8-421, gnl|oryCun1|scaffold_128285 (1428-927)
               

               
               8-421, gnl|panTro1|chr18_random (32485836-32485340)
               

               
               8-421, gnl|rheMac2|chr20 (56632175-56632658)
               

               
               8-421, gnl|rn3|chr19 (9957215-9956706)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               kid (0.129735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)

	199-295, - strand, RNAz p=0.897164
	308-421, + strand, RNAz p=0.987811

	8-421, gnl\|bosTau2\|chr18 (23023440-23023838)
	8-421, gnl\|canFam2\|chr2 (61209790-61209295)
	8-421, gnl\|dasNov1\|scaffold_35023 (9077-9473)
	8-421, gnl\|echTel1\|scaffold_223623 (2157-1696)
	8-421, gnl\|hg17\|chr16 (56874097-56874593)
	8-421, gnl\|Hg17\|chr16 (56874192-56874592)
	8-421, gnl\|loxAfr1\|scaffold_8201 (28778-28293)
	8-421, gnl\|mm7\|chr8 (94150660-94151179)
	8-421, gnl\|oryCun1\|scaffold_128285 (1428-927)
	8-421, gnl\|panTro1\|chr18_random (32485836-32485340)
	8-421, gnl\|rheMac2\|chr20 (56632175-56632658)
	8-421, gnl\|rn3\|chr19 (9957215-9956706)