Non-Coding RNA Search

ruio23_k17.y1

Sequence:


               
               CATGGACCCCCTACGTGTTTGTTTTAGATTATATCTGTCCTTCACTTGGGTGGTGACATA
CCTCTCCACTCAGTGGTGACATGACCGACCCCTTTTGCGGACTGTATTTAGATATGTAAC
TGAAGCTGGAAAGCAGTGTAACATACATACATAGAGGAACTATAATGCATAATCTCCATA
GATGTAATACTTTTTCTCCTAAACATATTATATATTGGTAATTTCTAAAAATCATCACTT
TTTTCAGAGCCCTATATAAATGAATGACAACCTGATAGTACTATTGATGGTGAAAGTTTC
CCTTGTTTTTAAATTAAAGTATTTCTGTATCATCACAAAGTGTCTTTGGGAAAGAACATT
TTAAAGTTTTCTCCACTGAAGGCAAAATAGAGGCACTGGTTTGAATAGTAGTAAAAAATG
ATTAACTTTTAATACTGGATGAGTTGATAGTCTGATTATTGACACTTTCTTAGTATTCAT
AATATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGGACCCCCTACGTGTTTGTTTTAGATTATATCTGTCCTTCACTTGGGTGGTGACATA
CCTCTCCACTCAGTGGTGACATGACCGACCCCTTTTGCGGACTGTATTTAGATATGTAAC
TGAAGCTGGAAAGCAGTGTAACATACATACATAGAGGAACTATAATGCATAATCTCCATA
GATGTAATACTTTTTCTCCTAAACATATTATATATTGGTAATTTCTAAAAATCATCACTT
TTTTCAGAGCCCTATATAAATGAATGACAACCTGATAGTACTATTGATGGTGAAAGTTTC
CCTTGTTTTTAAATTAAAGTATTTCTGTATCATCACAAAGTGTCTTTGGGAAAGAACATT
TTAAAGTTTTCTCCACTGAAGGCAAAATAGAGGCACTGGTTTGAATAGTAGTAAAAAATG
ATTAACTTTTAATACTGGATGAGTTGATAGTCTGATTATTGACACTTTCTTAGTATTCAT
AATATCA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               58-487, gnl|bosTau2|chr23 (34329372-34328950)
               

               
               58-487, gnl|canFam2|chr35 (14191433-14191878)
               

               
               58-487, gnl|dasNov1|scaffold_1931 (80713-81158)
               

               
               58-487, gnl|echTel1|scaffold_285875 (66139-66577)
               

               
               58-487, gnl|hg17|chr6 (11689509-11689996)
               

               
               58-487, gnl|Hg17|chr6 (11689694-11690169)
               

               
               58-487, gnl|Mm7|chr13 (41079865-41080337)
               

               
               58-487, gnl|monDom2|scaffold_3 (98703087-98703528)
               

               
               58-487, gnl|oryCun1|scaffold_187974 (37879-37463)
               

               
               58-487, gnl|panTro1|chr5 (11967458-11967945)
               

               
               58-487, gnl|rheMac2|chr4 (11545801-11546285)
               

               
               58-487, gnl|rn3|chr17 (29023272-29022879)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-487, gnl|bosTau2|chr23 (34329372-34328950)
               

               
               58-487, gnl|canFam2|chr35 (14191433-14191878)
               

               
               58-487, gnl|dasNov1|scaffold_1931 (80713-81158)
               

               
               58-487, gnl|echTel1|scaffold_285875 (66139-66577)
               

               
               58-487, gnl|hg17|chr6 (11689509-11689996)
               

               
               58-487, gnl|Hg17|chr6 (11689694-11690169)
               

               
               58-487, gnl|Mm7|chr13 (41079865-41080337)
               

               
               58-487, gnl|monDom2|scaffold_3 (98703087-98703528)
               

               
               58-487, gnl|oryCun1|scaffold_187974 (37879-37463)
               

               
               58-487, gnl|panTro1|chr5 (11967458-11967945)
               

               
               58-487, gnl|rheMac2|chr4 (11545801-11546285)
               

               
               58-487, gnl|rn3|chr17 (29023272-29022879)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               kid (0.129735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)

	58-487, gnl\|bosTau2\|chr23 (34329372-34328950)
	58-487, gnl\|canFam2\|chr35 (14191433-14191878)
	58-487, gnl\|dasNov1\|scaffold_1931 (80713-81158)
	58-487, gnl\|echTel1\|scaffold_285875 (66139-66577)
	58-487, gnl\|hg17\|chr6 (11689509-11689996)
	58-487, gnl\|Hg17\|chr6 (11689694-11690169)
	58-487, gnl\|Mm7\|chr13 (41079865-41080337)
	58-487, gnl\|monDom2\|scaffold_3 (98703087-98703528)
	58-487, gnl\|oryCun1\|scaffold_187974 (37879-37463)
	58-487, gnl\|panTro1\|chr5 (11967458-11967945)
	58-487, gnl\|rheMac2\|chr4 (11545801-11546285)
	58-487, gnl\|rn3\|chr17 (29023272-29022879)