Non-Coding RNA Search

ruio26_k21.y1

Sequence:


               
               GTGCTGTTTTGTATGAAAGAGGTTTTAAAAATTGTGTTCTGATAAGCTTGGATTTATCCT
TGGAGAGGGAATGTAGTTTCCATTATGACAGTAGCTTAATATCAAAGGTAGGTTGTACCA
ACTATAGGAAGGTGGTAATAAGCAGTAGATAAGAGAACATAAGGTATCTTATAAAAAGGA
GGGGAGACAGTAAGAAACGCACACACAGAGAAAGCCTTTTTATTGTTGCCAGGAAGAGAC
AATCTGATACCTAGGACATAGGAGTTGCTCTCTTTCTCTCTCTTCCTCCGCCTGTGGCAA
ATGAGCCAGGAAAAAGCTAGAAACAAGAGACAGAGAGAAGCTATCTCTCCAACTGTTGGT
CCCAGCCAAATAGGATAAATAGTTCATATGATGATGATAATGATGACAAGCGTAATGACG
AAGAGATGTTATTGGCCCAGACGAAAAAAACAAAGATTTCAAACTATGCTTAAATCCCAA
AGTATTGCTGCTAGAGCCACTTACATGATCCCGGGGACTATAATGAAAGGTATTTAGGAT
GAGTGAAATAAATACAATTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCTGTTTTGTATGAAAGAGGTTTTAAAAATTGTGTTCTGATAAGCTTGGATTTATCCT
TGGAGAGGGAATGTAGTTTCCATTATGACAGTAGCTTAATATCAAAGGTAGGTTGTACCA
ACTATAGGAAGGTGGTAATAAGCAGTAGATAAGAGAACATAAGGTATCTTATAAAAAGGA
GGGGAGACAGTAAGAAACGCACACACAGAGAAAGCCTTTTTATTGTTGCCAGGAAGAGAC
AATCTGATACCTAGGACATAGGAGTTGCTCTCTTTCTCTCTCTTCCTCCGCCTGTGGCAA
ATGAGCCAGGAAAAAGCTAGAAACAAGAGACAGAGAGAAGCTATCTCTCCAACTGTTGGT
CCCAGCCAAATAGGATAAATAGTTCATATGATGATGATAATGATGACAAGCGTAATGACG
AAGAGATGTTATTGGCCCAGACGAAAAAAACAAAGATTTCAAACTATGCTTAAATCCCAA
AGTATTGCTGCTAGAGCCACTTACATGATCCCGGGGACTATAATGAAAGGTATTTAGGAT
GAGTGAAATAAATACAATTGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               158-351, + strand, RNAz p=0.999191

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-351, + strand, RNAz p=0.999191

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               252-365, - strand, RNAmicro p=0.999932

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               252-365, - strand, RNAmicro p=0.999932

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-561, gnl|bosTau2|chr11 (16791638-16792198)
               

               
               1-561, gnl|Hg17|chr2 (39656656-39657183)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-561, gnl|bosTau2|chr11 (16791638-16792198)
               

               
               1-561, gnl|Hg17|chr2 (39656656-39657183)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               kid (0.129735)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)

	1-561, gnl\|bosTau2\|chr11 (16791638-16792198)
	1-561, gnl\|Hg17\|chr2 (39656656-39657183)