Non-Coding RNA Search

ruio33_h17.y1

Sequence:


               
               GTTAGGTTTAACAAAAGAATCTACTTGTACATAATGCACCTTCAGAAGGACTATGTCCTT
TGATGCTATGAAATGCAAACAACTTTGAAGGCAACAGAAGACTGTTTATTTAAGTCAGTT
CTTTGTCAGGTTCCTGCTGTTCTCCTGCAGAAAACTGATTCTATGAGGCTGAACAGGAAA
TGCCTTGTGGAAACAGGAAGTCCAAGTGATTCATGTAATGAGGAATGTAAGGGAAAAAAA
AAACGGAGGATAGTGTTTTACTCTTCTGTTTTTAAAGGGCACCCTATGAATTGATTTATT
GTCTAAGAAAATAACACCACAAGTAGGGAAATTGTTAAGGAAGCTTTTCACTGGAACATT
TCCTTCATACTCCCTTTTGATATGTTTACCTTGTTTTATAGGTTTACTTTTGTTAAGCTA
GTTAAGATTCGTTGTATTAAGACCCCTTAATACGGATAATCCAAATTGACCTAGAATCTT
TGTGAGGTTTTTTTCTATTAAAATATTTATATTTCTAAATCCGAGGTATTTTAAGGTGTA
GTATCCTGTTTCAAAGGAGATATAGCAGTTTTGCCAAATGTAGACATTGTACAACTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTAGGTTTAACAAAAGAATCTACTTGTACATAATGCACCTTCAGAAGGACTATGTCCTT
TGATGCTATGAAATGCAAACAACTTTGAAGGCAACAGAAGACTGTTTATTTAAGTCAGTT
CTTTGTCAGGTTCCTGCTGTTCTCCTGCAGAAAACTGATTCTATGAGGCTGAACAGGAAA
TGCCTTGTGGAAACAGGAAGTCCAAGTGATTCATGTAATGAGGAATGTAAGGGAAAAAAA
AAACGGAGGATAGTGTTTTACTCTTCTGTTTTTAAAGGGCACCCTATGAATTGATTTATT
GTCTAAGAAAATAACACCACAAGTAGGGAAATTGTTAAGGAAGCTTTTCACTGGAACATT
TCCTTCATACTCCCTTTTGATATGTTTACCTTGTTTTATAGGTTTACTTTTGTTAAGCTA
GTTAAGATTCGTTGTATTAAGACCCCTTAATACGGATAATCCAAATTGACCTAGAATCTT
TGTGAGGTTTTTTTCTATTAAAATATTTATATTTCTAAATCCGAGGTATTTTAAGGTGTA
GTATCCTGTTTCAAAGGAGATATAGCAGTTTTGCCAAATGTAGACATTGTACAACTGTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               79-196, + strand, RNAz p=0.520673

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-196, + strand, RNAz p=0.520673

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               177-292, + strand, RNAmicro p=0.940532

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               177-292, + strand, RNAmicro p=0.940532

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of CR749550, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of CR749550, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-599, gnl|bosTau2|chr4 (8878884-8878290)
               

               
               1-599, gnl|Hg17|chr7 (18480330-18480929)
               

               
               1-599, gnl|Mm7|chr12 (32215946-32215350)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-599, gnl|bosTau2|chr4 (8878884-8878290)
               

               
               1-599, gnl|Hg17|chr7 (18480330-18480929)
               

               
               1-599, gnl|Mm7|chr12 (32215946-32215350)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               kid (0.129735)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)

	1-599, gnl\|bosTau2\|chr4 (8878884-8878290)
	1-599, gnl\|Hg17\|chr7 (18480330-18480929)
	1-599, gnl\|Mm7\|chr12 (32215946-32215350)