Non-Coding RNA Search

ruio34_f5.y1

Sequence:


               
               AATCCAGATACTCTTATACTACTTAGAACAATGATTTGAAATTTATTTGTTTTTAAACTG
TGTGTATGTACTATATGCAGAATGATATTCCTTCTAAAAACACTTTGAAACACGTGAGTC
CTCATGCTGGATTTACTGAGTGTCACAAAACTTCTGTTCCTCTTCACTCAGAACAAGTGG
AAAGTAGCAGTAGAAGGCTATCTACAGAAGAAACTCATGAAGTAGATTCCAAAGCAGCTT
TACTACCGGTTTGTACATTTCAGTGAAACATACACATATTTTAAAATACGTATTTATTAG
AGAAGAGCTAGGAGATGGTGATATTTGAGATATCTATCTTTCAAAAAATGTTTAACCATA
AAAAAACTATCTCTGTACATGATAGCAGTTATAGGAAAGAGTTTCTTCCTATAGTGAAGA
GTCAGACATTTTTGAAGAAAAATGTGTGCAAAAGAAAGAAAGGCAAGAATGTTTTGAGTT
GAAACTAAAATCATTTCCAGCCAATTGAGGGAATATTTGATTTTACAAACACTTTTTTTG
GCCATACCCACAGCTTTTGGAAGTTCCCAAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCCAGATACTCTTATACTACTTAGAACAATGATTTGAAATTTATTTGTTTTTAAACTG
TGTGTATGTACTATATGCAGAATGATATTCCTTCTAAAAACACTTTGAAACACGTGAGTC
CTCATGCTGGATTTACTGAGTGTCACAAAACTTCTGTTCCTCTTCACTCAGAACAAGTGG
AAAGTAGCAGTAGAAGGCTATCTACAGAAGAAACTCATGAAGTAGATTCCAAAGCAGCTT
TACTACCGGTTTGTACATTTCAGTGAAACATACACATATTTTAAAATACGTATTTATTAG
AGAAGAGCTAGGAGATGGTGATATTTGAGATATCTATCTTTCAAAAAATGTTTAACCATA
AAAAAACTATCTCTGTACATGATAGCAGTTATAGGAAAGAGTTTCTTCCTATAGTGAAGA
GTCAGACATTTTTGAAGAAAAATGTGTGCAAAAGAAAGAAAGGCAAGAATGTTTTGAGTT
GAAACTAAAATCATTTCCAGCCAATTGAGGGAATATTTGATTTTACAAACACTTTTTTTG
GCCATACCCACAGCTTTTGGAAGTTCCCAAGCC

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               2-177, gnl|bosTau2|chr3 (16041288-16041468)
               

               
               2-177, gnl|canFam2|chr30 (19482948-19483109)
               

               
               2-177, gnl|dasNov1|scaffold_19541 (20044-19880)
               

               
               2-177, gnl|echTel1|scaffold_312308 (2280-2416)
               

               
               2-177, gnl|hg17|chr15 (48665863-48666028)
               

               
               2-177, gnl|Hg17|chr15 (48666063-48665881)
               

               
               2-177, gnl|mm7|chr2 (126548124-126548276)
               

               
               2-177, gnl|monDom2|scaffold_12 (17898718-17898552)
               

               
               2-177, gnl|panTro1|chr16 (48690733-48690899)
               

               
               2-177, gnl|rheMac2|chr7 (28904118-28904283)
               

               
               2-177, gnl|rn3|chr3 (114241167-114241319)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-177, gnl|bosTau2|chr3 (16041288-16041468)
               

               
               2-177, gnl|canFam2|chr30 (19482948-19483109)
               

               
               2-177, gnl|dasNov1|scaffold_19541 (20044-19880)
               

               
               2-177, gnl|echTel1|scaffold_312308 (2280-2416)
               

               
               2-177, gnl|hg17|chr15 (48665863-48666028)
               

               
               2-177, gnl|Hg17|chr15 (48666063-48665881)
               

               
               2-177, gnl|mm7|chr2 (126548124-126548276)
               

               
               2-177, gnl|monDom2|scaffold_12 (17898718-17898552)
               

               
               2-177, gnl|panTro1|chr16 (48690733-48690899)
               

               
               2-177, gnl|rheMac2|chr7 (28904118-28904283)
               

               
               2-177, gnl|rn3|chr3 (114241167-114241319)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               kid (0.129735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)

	2-177, gnl\|bosTau2\|chr3 (16041288-16041468)
	2-177, gnl\|canFam2\|chr30 (19482948-19483109)
	2-177, gnl\|dasNov1\|scaffold_19541 (20044-19880)
	2-177, gnl\|echTel1\|scaffold_312308 (2280-2416)
	2-177, gnl\|hg17\|chr15 (48665863-48666028)
	2-177, gnl\|Hg17\|chr15 (48666063-48665881)
	2-177, gnl\|mm7\|chr2 (126548124-126548276)
	2-177, gnl\|monDom2\|scaffold_12 (17898718-17898552)
	2-177, gnl\|panTro1\|chr16 (48690733-48690899)
	2-177, gnl\|rheMac2\|chr7 (28904118-28904283)
	2-177, gnl\|rn3\|chr3 (114241167-114241319)