Non-Coding RNA Search

ruio35_m17.y1

Sequence:


               
               CATATGCCGCGGGAGCGGCCCAAAGAAACAGCAAAAAGACAAAATAAATAAATAAATAAA
TACAAGATTTTATGATGTAGGAGACTCTCCAGGGGAGAGAGAGGGAGATTTGGGAAACAG
TGGCTGTGGGAAATGAGAACAGTGAAATAAATAACCCTAAGTTTTCTTTTATAAAAGTTG
GATTTGATAACCATTTTGAGATATTTATTTGGTGGCATTATTTGCTATGATGGAGTAACT
TAAAATATGAGACAGGTTTTAAGGAGACAGATGTGATGTTTAGAGGGATGTCCCGTAGCT
AAGATGTTCTGTGAGTAACATATGAATGTTCCGTGCAAATGACTTATGAATTTTTCAAAA
CAGATGAGATTTGCCTGGAGCTGTATTTAAAAGGAAGAAGAGCAGAGGTTCAAAGTAAGA
GTACACAGAGTTCTTGGCCCCTCAGTAGCTGGTACAGTTGGATTAATGAGTTTTGAAGGA
CATAACGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATATGCCGCGGGAGCGGCCCAAAGAAACAGCAAAAAGACAAAATAAATAAATAAATAAA
TACAAGATTTTATGATGTAGGAGACTCTCCAGGGGAGAGAGAGGGAGATTTGGGAAACAG
TGGCTGTGGGAAATGAGAACAGTGAAATAAATAACCCTAAGTTTTCTTTTATAAAAGTTG
GATTTGATAACCATTTTGAGATATTTATTTGGTGGCATTATTTGCTATGATGGAGTAACT
TAAAATATGAGACAGGTTTTAAGGAGACAGATGTGATGTTTAGAGGGATGTCCCGTAGCT
AAGATGTTCTGTGAGTAACATATGAATGTTCCGTGCAAATGACTTATGAATTTTTCAAAA
CAGATGAGATTTGCCTGGAGCTGTATTTAAAAGGAAGAAGAGCAGAGGTTCAAAGTAAGA
GTACACAGAGTTCTTGGCCCCTCAGTAGCTGGTACAGTTGGATTAATGAGTTTTGAAGGA
CATAACGTGC

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               149-479, gnl|bosTau2|chr1 (68762250-68762573)
               

               
               149-479, gnl|canFam2|chr34 (29924408-29924723)
               

               
               149-479, gnl|dasNov1|scaffold_27528 (34566-34848)
               

               
               149-479, gnl|hg17|chr3 (162113308-162113589)
               

               
               149-479, gnl|Hg17|chr3 (162113404-162113706)
               

               
               149-479, gnl|loxAfr1|scaffold_12473 (13765-14074)
               

               
               149-479, gnl|monDom2|scaffold_42 (17886726-17886894)
               

               
               149-479, gnl|oryCun1|scaffold_203503 (48017-48317)
               

               
               149-479, gnl|panTro1|chr2 (165373157-165373452)
               

               
               149-479, gnl|rheMac2|chr2 (126766940-126766648)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               149-479, gnl|bosTau2|chr1 (68762250-68762573)
               

               
               149-479, gnl|canFam2|chr34 (29924408-29924723)
               

               
               149-479, gnl|dasNov1|scaffold_27528 (34566-34848)
               

               
               149-479, gnl|hg17|chr3 (162113308-162113589)
               

               
               149-479, gnl|Hg17|chr3 (162113404-162113706)
               

               
               149-479, gnl|loxAfr1|scaffold_12473 (13765-14074)
               

               
               149-479, gnl|monDom2|scaffold_42 (17886726-17886894)
               

               
               149-479, gnl|oryCun1|scaffold_203503 (48017-48317)
               

               
               149-479, gnl|panTro1|chr2 (165373157-165373452)
               

               
               149-479, gnl|rheMac2|chr2 (126766940-126766648)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               kid (0.129735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)

	149-479, gnl\|bosTau2\|chr1 (68762250-68762573)
	149-479, gnl\|canFam2\|chr34 (29924408-29924723)
	149-479, gnl\|dasNov1\|scaffold_27528 (34566-34848)
	149-479, gnl\|hg17\|chr3 (162113308-162113589)
	149-479, gnl\|Hg17\|chr3 (162113404-162113706)
	149-479, gnl\|loxAfr1\|scaffold_12473 (13765-14074)
	149-479, gnl\|monDom2\|scaffold_42 (17886726-17886894)
	149-479, gnl\|oryCun1\|scaffold_203503 (48017-48317)
	149-479, gnl\|panTro1\|chr2 (165373157-165373452)
	149-479, gnl\|rheMac2\|chr2 (126766940-126766648)