rute2117b_b20.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAATGGAGGGGAGCTGTTTTTTCACTTACAAAGAGAACGGTCCTTTCCTGAACACAGAGC TCGGTTTTATGCTGCTGAAATCGCCAGTGCTTTGGGTTACCTGCACTCCATCAAAATCGT GTACAGAGACTTGAAACCAGAAAATATTCTTTTGGATTCAGTGGGACATGTTGTCTTAAC AGATTTTGGGCTTTGTAAAGAAGGAATTGCTATTTCTGACACCACAACCACATTTTGTGG GACACCAGAGTACCTTGCACCTGAAGTAATCAGAAAACAGCCCTATGACAATACTGTAGA TTGGTGGTGCCTTGGTGCTGTTCTGTATGAAATGCTGTATGGATTGCCTCCTTTTTATTG TCGAGATGTTGCTGAGATGTATGACAATATTCTTCACAAGCCCCTAAACTTGAGGCCAGG AGTGAGCCTCACAGCCTGGTCCATTCTGGAAGAACTGCTAGAGAAAGACAGGCAAAATCG ACTTGGTGCCAAAGAAGACTTTCTTGAAATTCAGAATCATCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAATGGAGGGGAGCTGTTTTTTCACTTACAAAGAGAACGGTCCTTTCCTGAACACAGAGC TCGGTTTTATGCTGCTGAAATCGCCAGTGCTTTGGGTTACCTGCACTCCATCAAAATCGT GTACAGAGACTTGAAACCAGAAAATATTCTTTTGGATTCAGTGGGACATGTTGTCTTAAC AGATTTTGGGCTTTGTAAAGAAGGAATTGCTATTTCTGACACCACAACCACATTTTGTGG GACACCAGAGTACCTTGCACCTGAAGTAATCAGAAAACAGCCCTATGACAATACTGTAGA TTGGTGGTGCCTTGGTGCTGTTCTGTATGAAATGCTGTATGGATTGCCTCCTTTTTATTG TCGAGATGTTGCTGAGATGTATGACAATATTCTTCACAAGCCCCTAAACTTGAGGCCAGG AGTGAGCCTCACAGCCTGGTCCATTCTGGAAGAACTGCTAGAGAAAGACAGGCAAAATCG ACTTGGTGCCAAAGAAGACTTTCTTGAAATTCAGAATCATCCT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 385-502, - strand, RNAz p=0.965195 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 385-502, - strand, RNAz p=0.965195 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 12-126, gnl|bosTau2|chr14 (18898484-18898370) | |
| 12-126, gnl|canFam2|chr29 (19403023-19403145) | |
| 12-126, gnl|danRer3|chr24 (21314233-21314076) | |
| 12-126, gnl|dasNov1|scaffold_41710 (11878-11977) | |
| 12-126, gnl|echTel1|scaffold_289624 (108549-108418) | |
| 12-126, gnl|fr1|chrUn (87710379-87710247) | |
| 12-126, gnl|galGal2|chr2 (114739392-114739514) | |
| 12-126, gnl|hg17|chr8 (67914784-67914917) | |
| 12-126, gnl|Hg17|chr8 (67914790-67914904) | |
| 12-126, gnl|loxAfr1|scaffold_9724 (53854-53985) | |
| 12-126, gnl|mm7|chr1 (10027132-10027251) | |
| 12-126, gnl|Mm7|chr1 (10027134-10027248) | |
| 12-126, gnl|monDom2|scaffold_4 (94621714-94621583) | |
| 12-126, gnl|oryCun1|scaffold_189543 (63453-63575) | |
| 12-126, gnl|panTro1|chr7 (69934332-69934455) | |
| 12-126, gnl|rheMac2|chr8 (69471975-69472098) | |
| 12-126, gnl|rn3|chr1 (23507858-23507736) | |
| 12-126, gnl|tetNig1|chr6 (2484475-2484342) | |
| 12-126, gnl|xenTro1|scaffold_109 (210883-211000) | |
| 346-502, gnl|bosTau2|chr14 (18893144-18892988) | |
| 346-502, gnl|canFam2|chr29 (19408626-19408815) | |
| 346-502, gnl|danRer3|chr24 (21308495-21308303) | |
| 346-502, gnl|dasNov1|scaffold_41710 (12169-12319) | |
| 346-502, gnl|echTel1|scaffold_289624 (102116-101931) | |
| 346-502, gnl|fr1|chrUn (87709393-87709201) | |
| 346-502, gnl|galGal2|chr2 (114742843-114743020) | |
| 346-502, gnl|hg17|chr8 (67921957-67922147) | |
| 346-502, gnl|Hg17|chr8 (67921981-67922137) | |
| 346-502, gnl|loxAfr1|scaffold_67899 (4926-5106) | |
| 346-502, gnl|mm7|chr1 (10031569-10031764) | |
| 346-502, gnl|Mm7|chr1 (10031598-10031754) | |
| 346-502, gnl|monDom2|scaffold_4 (94611628-94611445) | |
| 346-502, gnl|oryCun1|scaffold_203512 (8-186) | |
| 346-502, gnl|panTro1|chr7 (69941470-69941659) | |
| 346-502, gnl|rheMac2|chr8 (69478871-69479062) | |
| 346-502, gnl|rn3|chr11 (23785766-23785916) | |
| 346-502, gnl|tetNig1|chr6 (2483499-2483320) | |
| 346-502, gnl|xenTro1|scaffold_109 (212959-213145) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 12-126, gnl|bosTau2|chr14 (18898484-18898370) | |
| 12-126, gnl|canFam2|chr29 (19403023-19403145) | |
| 12-126, gnl|danRer3|chr24 (21314233-21314076) | |
| 12-126, gnl|dasNov1|scaffold_41710 (11878-11977) | |
| 12-126, gnl|echTel1|scaffold_289624 (108549-108418) | |
| 12-126, gnl|fr1|chrUn (87710379-87710247) | |
| 12-126, gnl|galGal2|chr2 (114739392-114739514) | |
| 12-126, gnl|hg17|chr8 (67914784-67914917) | |
| 12-126, gnl|Hg17|chr8 (67914790-67914904) | |
| 12-126, gnl|loxAfr1|scaffold_9724 (53854-53985) | |
| 12-126, gnl|mm7|chr1 (10027132-10027251) | |
| 12-126, gnl|Mm7|chr1 (10027134-10027248) | |
| 12-126, gnl|monDom2|scaffold_4 (94621714-94621583) | |
| 12-126, gnl|oryCun1|scaffold_189543 (63453-63575) | |
| 12-126, gnl|panTro1|chr7 (69934332-69934455) | |
| 12-126, gnl|rheMac2|chr8 (69471975-69472098) | |
| 12-126, gnl|rn3|chr1 (23507858-23507736) | |
| 12-126, gnl|tetNig1|chr6 (2484475-2484342) | |
| 12-126, gnl|xenTro1|scaffold_109 (210883-211000) | |
| 346-502, gnl|bosTau2|chr14 (18893144-18892988) | |
| 346-502, gnl|canFam2|chr29 (19408626-19408815) | |
| 346-502, gnl|danRer3|chr24 (21308495-21308303) | |
| 346-502, gnl|dasNov1|scaffold_41710 (12169-12319) | |
| 346-502, gnl|echTel1|scaffold_289624 (102116-101931) | |
| 346-502, gnl|fr1|chrUn (87709393-87709201) | |
| 346-502, gnl|galGal2|chr2 (114742843-114743020) | |
| 346-502, gnl|hg17|chr8 (67921957-67922147) | |
| 346-502, gnl|Hg17|chr8 (67921981-67922137) | |
| 346-502, gnl|loxAfr1|scaffold_67899 (4926-5106) | |
| 346-502, gnl|mm7|chr1 (10031569-10031764) | |
| 346-502, gnl|Mm7|chr1 (10031598-10031754) | |
| 346-502, gnl|monDom2|scaffold_4 (94611628-94611445) | |
| 346-502, gnl|oryCun1|scaffold_203512 (8-186) | |
| 346-502, gnl|panTro1|chr7 (69941470-69941659) | |
| 346-502, gnl|rheMac2|chr8 (69478871-69479062) | |
| 346-502, gnl|rn3|chr11 (23785766-23785916) | |
| 346-502, gnl|tetNig1|chr6 (2483499-2483320) | |
| 346-502, gnl|xenTro1|scaffold_109 (212959-213145) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (0.132784) |