Non-Coding RNA Search

rute2120b_j22.y1

Sequence:


               
               GGTCTGCAGGATCACAGATTCCTGGGCCTGAAGAGCTCTGGGACCTCTTTGTGCACCAGA
ATGACCTAGGTAGCTTGTTGGAAATGCAGATTCCTGGAACTTGTCCCCAGAGATTCTGAT
TCTTTGTCTAGACTGGGACCCAGGAACTTGCACACTCACAGCGCAAAGCTCTGTTCTCCC
TCTAATACCAGCTGTGTCACTTTGAGCAGGTTATCAGGTGTGTTTCAGCACCTCAGTTTC
CTCATCTGTTAGCGATAATAATAGTGTACTTCATAgagtaccctggtagctcaatgggtt
aaggatctggtgttgtcactgctgtggcatgggttcagtccctggcccaggaacttctac
atgacatggacatggccaaaaaaTAATAGTATACTTCCATCAGGGAACTGGCTGTGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCTGCAGGATCACAGATTCCTGGGCCTGAAGAGCTCTGGGACCTCTTTGTGCACCAGA
ATGACCTAGGTAGCTTGTTGGAAATGCAGATTCCTGGAACTTGTCCCCAGAGATTCTGAT
TCTTTGTCTAGACTGGGACCCAGGAACTTGCACACTCACAGCGCAAAGCTCTGTTCTCCC
TCTAATACCAGCTGTGTCACTTTGAGCAGGTTATCAGGTGTGTTTCAGCACCTCAGTTTC
CTCATCTGTTAGCGATAATAATAGTGTACTTCATAgagtaccctggtagctcaatgggtt
aaggatctggtgttgtcactgctgtggcatgggttcagtccctggcccaggaacttctac
atgacatggacatggccaaaaaaTAATAGTATACTTCCATCAGGGAACTGGCTGTGAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               55-174, + strand, RNAz p=0.998657

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               55-174, + strand, RNAz p=0.998657

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-272, gnl|bosTau2|chr10 (8645718-8645445)
               

               
               1-272, gnl|Hg17|chr15 (63350315-63350022)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-272, gnl|bosTau2|chr10 (8645718-8645445)
               

               
               1-272, gnl|Hg17|chr15 (63350315-63350022)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ute (0.132784)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)

	1-272, gnl\|bosTau2\|chr10 (8645718-8645445)
	1-272, gnl\|Hg17\|chr15 (63350315-63350022)