Non-Coding RNA Search

rute2125b_j7.y1

Sequence:


               
               AATGGACACTCTGGGTTGATTGTGAAAGAACTTGGTTCTTCCACCTCCAGCTCCTCAGAA
ACGGTGGTCAAACTTCGCGGCCAGAGTGCTGATTCTCTTCCGCAGACTATATGTCGAAAA
CCAAAGACCTCCACTGATCGACATAGCTTGAGCCTCGATGACATCAGACTGTACCAGAAA
GACTTCTTGCGCATCGCGGGGCTGTGTCAAGACGCCGCTCAGAGTTACACCTTCGGGTGC
GGCCATGAACTAGACGAGGAAGGCCTCTACTGCAGCAGCTGCTTGGCTCAGCAGTGTGTC
AACATCCAGGATGCTTTCCCAGTCAAAAGAACCAGCAAATACTTTTCTCTGGATCTCACC
CACGATGAAGTTCCAGAGTTTGTTGTATAAAGTGTATTGGCGTGCAGCTGTACAGACAGC
CTGCTGTCTGCTAGAGGCTATAAAAGCCATGGGTACTCCTTTACCACTTACTTGTGCCAT
ATCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGGACACTCTGGGTTGATTGTGAAAGAACTTGGTTCTTCCACCTCCAGCTCCTCAGAA
ACGGTGGTCAAACTTCGCGGCCAGAGTGCTGATTCTCTTCCGCAGACTATATGTCGAAAA
CCAAAGACCTCCACTGATCGACATAGCTTGAGCCTCGATGACATCAGACTGTACCAGAAA
GACTTCTTGCGCATCGCGGGGCTGTGTCAAGACGCCGCTCAGAGTTACACCTTCGGGTGC
GGCCATGAACTAGACGAGGAAGGCCTCTACTGCAGCAGCTGCTTGGCTCAGCAGTGTGTC
AACATCCAGGATGCTTTCCCAGTCAAAAGAACCAGCAAATACTTTTCTCTGGATCTCACC
CACGATGAAGTTCCAGAGTTTGTTGTATAAAGTGTATTGGCGTGCAGCTGTACAGACAGC
CTGCTGTCTGCTAGAGGCTATAAAAGCCATGGGTACTCCTTTACCACTTACTTGTGCCAT
ATCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61837465|ref|XP_609391.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61837465|ref|XP_609391.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               183-302, - strand, RNAz p=0.597174
               

               
               343-461, + strand, RNAz p=0.900562
               

               
               352-485, - strand, RNAz p=0.92501

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               183-302, - strand, RNAz p=0.597174
               

               
               343-461, + strand, RNAz p=0.900562
               

               
               352-485, - strand, RNAz p=0.92501

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK055545, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK055545, +

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               104-485, gnl|bosTau2|chr10 (29860976-29860594)
               

               
               104-485, gnl|canFam2|chr8 (30992207-30992544)
               

               
               104-485, gnl|danRer3|chr13 (39672857-39673205)
               

               
               104-485, gnl|dasNov1|scaffold_1554 (2084-1751)
               

               
               104-485, gnl|echTel1|scaffold_232388 (13429-13688)
               

               
               104-485, gnl|fr1|chrUn (2630556-2630213)
               

               
               104-485, gnl|galGal2|chr5 (54741648-54741973)
               

               
               104-485, gnl|hg17|chr14 (51264196-51264529)
               

               
               104-485, gnl|Hg17|chr14 (51264211-51264589)
               

               
               104-485, gnl|loxAfr1|scaffold_9355 (13653-13985)
               

               
               104-485, gnl|mm7|chr12 (68843206-68843538)
               

               
               104-485, gnl|Mm7|chr12 (68843221-68843597)
               

               
               104-485, gnl|monDom2|scaffold_73 (8069205-8069533)
               

               
               104-485, gnl|oryCun1|scaffold_174207 (49808-49486)
               

               
               104-485, gnl|panTro1|chr15 (50679687-50680020)
               

               
               104-485, gnl|rheMac2|chr7 (114779948-114780281)
               

               
               104-485, gnl|rn3|chr6 (93028084-93028425)
               

               
               104-485, gnl|tetNig1|chr10 (11201932-11201623)
               

               
               104-485, gnl|xenTro1|scaffold_341 (1225754-1226087)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               104-485, gnl|bosTau2|chr10 (29860976-29860594)
               

               
               104-485, gnl|canFam2|chr8 (30992207-30992544)
               

               
               104-485, gnl|danRer3|chr13 (39672857-39673205)
               

               
               104-485, gnl|dasNov1|scaffold_1554 (2084-1751)
               

               
               104-485, gnl|echTel1|scaffold_232388 (13429-13688)
               

               
               104-485, gnl|fr1|chrUn (2630556-2630213)
               

               
               104-485, gnl|galGal2|chr5 (54741648-54741973)
               

               
               104-485, gnl|hg17|chr14 (51264196-51264529)
               

               
               104-485, gnl|Hg17|chr14 (51264211-51264589)
               

               
               104-485, gnl|loxAfr1|scaffold_9355 (13653-13985)
               

               
               104-485, gnl|mm7|chr12 (68843206-68843538)
               

               
               104-485, gnl|Mm7|chr12 (68843221-68843597)
               

               
               104-485, gnl|monDom2|scaffold_73 (8069205-8069533)
               

               
               104-485, gnl|oryCun1|scaffold_174207 (49808-49486)
               

               
               104-485, gnl|panTro1|chr15 (50679687-50680020)
               

               
               104-485, gnl|rheMac2|chr7 (114779948-114780281)
               

               
               104-485, gnl|rn3|chr6 (93028084-93028425)
               

               
               104-485, gnl|tetNig1|chr10 (11201932-11201623)
               

               
               104-485, gnl|xenTro1|scaffold_341 (1225754-1226087)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ute (0.132784)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)

	183-302, - strand, RNAz p=0.597174
	343-461, + strand, RNAz p=0.900562
	352-485, - strand, RNAz p=0.92501

	104-485, gnl\|bosTau2\|chr10 (29860976-29860594)
	104-485, gnl\|canFam2\|chr8 (30992207-30992544)
	104-485, gnl\|danRer3\|chr13 (39672857-39673205)
	104-485, gnl\|dasNov1\|scaffold_1554 (2084-1751)
	104-485, gnl\|echTel1\|scaffold_232388 (13429-13688)
	104-485, gnl\|fr1\|chrUn (2630556-2630213)
	104-485, gnl\|galGal2\|chr5 (54741648-54741973)
	104-485, gnl\|hg17\|chr14 (51264196-51264529)
	104-485, gnl\|Hg17\|chr14 (51264211-51264589)
	104-485, gnl\|loxAfr1\|scaffold_9355 (13653-13985)
	104-485, gnl\|mm7\|chr12 (68843206-68843538)
	104-485, gnl\|Mm7\|chr12 (68843221-68843597)
	104-485, gnl\|monDom2\|scaffold_73 (8069205-8069533)
	104-485, gnl\|oryCun1\|scaffold_174207 (49808-49486)
	104-485, gnl\|panTro1\|chr15 (50679687-50680020)
	104-485, gnl\|rheMac2\|chr7 (114779948-114780281)
	104-485, gnl\|rn3\|chr6 (93028084-93028425)
	104-485, gnl\|tetNig1\|chr10 (11201932-11201623)
	104-485, gnl\|xenTro1\|scaffold_341 (1225754-1226087)