Non-Coding RNA Search

rute2128b_k19.y1

Sequence:


               
               TTAAGTCGATGATGGGTTTTTCCAGCACTGGGGTGTTTTTATGTGCATGGCTCTAAGAGC
AGTGCCCCAGTAATGGGATGGTTATTCAGTAAGAAAACTATTAAAGTGGTTTGTGTCCGA
ACAGTAAAAGAGAATGACCTATTTTCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAGTCGATGATGGGTTTTTCCAGCACTGGGGTGTTTTTATGTGCATGGCTCTAAGAGC
AGTGCCCCAGTAATGGGATGGTTATTCAGTAAGAAAACTATTAAAGTGGTTTGTGTCCGA
ACAGTAAAAGAGAATGACCTATTTTCACT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-145, - strand, RNAz p=0.774419
               

               
               19-145, - strand, RNAz p=0.988965

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-145, - strand, RNAz p=0.774419
               

               
               19-145, - strand, RNAz p=0.988965

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-145, gnl|bosTau2|chr3 (29626715-29626858)
               

               
               1-145, gnl|canFam2|chr6 (47059449-47059221)
               

               
               1-145, gnl|dasNov1|scaffold_678 (159876-160102)
               

               
               1-145, gnl|hg17|chr1 (107830100-107830326)
               

               
               1-145, gnl|Hg17|chr1 (107830329-107830183)
               

               
               1-145, gnl|loxAfr1|scaffold_10233 (15837-15611)
               

               
               1-145, gnl|mm7|chr3 (109500031-109499805)
               

               
               1-145, gnl|Mm7|chr3 (109499800-109499946)
               

               
               1-145, gnl|monDom2|scaffold_0 (9219419-9219184)
               

               
               1-145, gnl|oryCun1|scaffold_202021 (81220-81448)
               

               
               1-145, gnl|panTro1|chr1 (106936881-106937112)
               

               
               1-145, gnl|rheMac2|chr1 (110484870-110485101)
               

               
               1-145, gnl|rn3|chr2 (205285324-205285098)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-145, gnl|bosTau2|chr3 (29626715-29626858)
               

               
               1-145, gnl|canFam2|chr6 (47059449-47059221)
               

               
               1-145, gnl|dasNov1|scaffold_678 (159876-160102)
               

               
               1-145, gnl|hg17|chr1 (107830100-107830326)
               

               
               1-145, gnl|Hg17|chr1 (107830329-107830183)
               

               
               1-145, gnl|loxAfr1|scaffold_10233 (15837-15611)
               

               
               1-145, gnl|mm7|chr3 (109500031-109499805)
               

               
               1-145, gnl|Mm7|chr3 (109499800-109499946)
               

               
               1-145, gnl|monDom2|scaffold_0 (9219419-9219184)
               

               
               1-145, gnl|oryCun1|scaffold_202021 (81220-81448)
               

               
               1-145, gnl|panTro1|chr1 (106936881-106937112)
               

               
               1-145, gnl|rheMac2|chr1 (110484870-110485101)
               

               
               1-145, gnl|rn3|chr2 (205285324-205285098)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ute (0.132784)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)

	1-145, - strand, RNAz p=0.774419
	19-145, - strand, RNAz p=0.988965

	1-145, gnl\|bosTau2\|chr3 (29626715-29626858)
	1-145, gnl\|canFam2\|chr6 (47059449-47059221)
	1-145, gnl\|dasNov1\|scaffold_678 (159876-160102)
	1-145, gnl\|hg17\|chr1 (107830100-107830326)
	1-145, gnl\|Hg17\|chr1 (107830329-107830183)
	1-145, gnl\|loxAfr1\|scaffold_10233 (15837-15611)
	1-145, gnl\|mm7\|chr3 (109500031-109499805)
	1-145, gnl\|Mm7\|chr3 (109499800-109499946)
	1-145, gnl\|monDom2\|scaffold_0 (9219419-9219184)
	1-145, gnl\|oryCun1\|scaffold_202021 (81220-81448)
	1-145, gnl\|panTro1\|chr1 (106936881-106937112)
	1-145, gnl\|rheMac2\|chr1 (110484870-110485101)
	1-145, gnl\|rn3\|chr2 (205285324-205285098)