Non-Coding RNA Search

rvin011_m12.y1

Sequence:


               
               GAAACGTGTATTACCAGTGGGGTTTTTTAGCTTTTAAATCAAAATAATAATTACAAATGT
ACAATTTAGCTTAATGGATCAGAAATCCTCTCCAGAGAAGTTTGGTTTCTTTGCTGCAAG
AAGAATGAGGTTCTGAAACCTTACCCAAGAACTTAGAAGCCATCAGCCAAGTATCCATGT
TTCTCTGTGCAAAATGTCATAGCTTAAATAAATGTACAATATTCAATTGTAATGCATGCC
TTCAAGTTGTAAGTAGCCAGATTTCTCTATGATGTCATTGAAACATGCTACTTTTTAATT
GGCCCTGTACAGTTTGCTTATTTATAAATTTATTGAAAACACTACAGGTGTTGGTTAAAA
TGTAGGCTTCTAGCTCATAACTTCAGTTATTTTTTGAGTGTGCAAACAGCTATTTTGCAC
TGTATTAAATGTAACTTATTTAATGAAATCAAAAGCAGTAGACAGATGTTGGTGCAATAC
GAATATTGTGATGCATTTATATTAATAAAATGCTAAACGTCAATTTATCACAACGCATGT
TTGACTTTAGACTGTAAATAGAGATCAGTTTATTTCTGTGCTGGTAAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAACGTGTATTACCAGTGGGGTTTTTTAGCTTTTAAATCAAAATAATAATTACAAATGT
ACAATTTAGCTTAATGGATCAGAAATCCTCTCCAGAGAAGTTTGGTTTCTTTGCTGCAAG
AAGAATGAGGTTCTGAAACCTTACCCAAGAACTTAGAAGCCATCAGCCAAGTATCCATGT
TTCTCTGTGCAAAATGTCATAGCTTAAATAAATGTACAATATTCAATTGTAATGCATGCC
TTCAAGTTGTAAGTAGCCAGATTTCTCTATGATGTCATTGAAACATGCTACTTTTTAATT
GGCCCTGTACAGTTTGCTTATTTATAAATTTATTGAAAACACTACAGGTGTTGGTTAAAA
TGTAGGCTTCTAGCTCATAACTTCAGTTATTTTTTGAGTGTGCAAACAGCTATTTTGCAC
TGTATTAAATGTAACTTATTTAATGAAATCAAAAGCAGTAGACAGATGTTGGTGCAATAC
GAATATTGTGATGCATTTATATTAATAAAATGCTAAACGTCAATTTATCACAACGCATGT
TTGACTTTAGACTGTAAATAGAGATCAGTTTATTTCTGTGCTGGTAAAAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               356-513, + strand, RNAz p=0.748516

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               356-513, + strand, RNAz p=0.748516

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001681, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001681, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-591, gnl|bosTau2|chr17 (30338326-30337736)
               

               
               1-591, gnl|Hg17|chr12 (109250980-109251571)
               

               
               1-591, gnl|Mm7|chr5 (121688366-121687788)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-591, gnl|bosTau2|chr17 (30338326-30337736)
               

               
               1-591, gnl|Hg17|chr12 (109250980-109251571)
               

               
               1-591, gnl|Mm7|chr5 (121688366-121687788)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               vin (0.332557)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)

	1-591, gnl\|bosTau2\|chr17 (30338326-30337736)
	1-591, gnl\|Hg17\|chr12 (109250980-109251571)
	1-591, gnl\|Mm7\|chr5 (121688366-121687788)