Non-Coding RNA Search

Ss1.1-Liv1-LVR010055D02.5

Sequence:


               
               CCGTCGGGAGCGCTTCGGGTTGCGGCTTTTTTTCTCTAGCTAAACCAGGCCTACGTTTCA
GCAACCATGTCTAAGGGACCTGCAGTTGGCATTGATCTTGGCACCACCTATTCTTGTGTG
GGTGTCTTCCAGCACGGAAAAGTGGAAATAATTGCTAATGATCAGGGGAACCGAACCACC
CCAAGCTATGTTGCCTTTACTGATACTGAACGATTGATTGGTGATGCTGCGAAGAACCAA
GTTGCGATGAATCCCACCAACACGGTTTTTGATGCCAAACGCCTCATTGGACGAAGATTT
GATGATGCTGTTGTCCAGTCTGATATGAAGCATTGGCCCTTCGTGGTGGTGAATGATGCA
GGCAGGCCTAAGGTCCAAGTAGAATACAAGGGAGAGACAAAAAGTTTCTATCCAGAGGAG
GTGTCATCCATGGTTTTGACAAAGATGAAGGAAATTGCAGAAGCCTACCTTGGGAAGACT
GTTACCAATGCTGTTGTCACAGTACCAGCATACTTTAACGACTCTCAGCGTCAGGCTACC
AAAGATGCTGGAACTATTGCTGGTCTCAATGTACTTAGAATCATCAATGAGCCAACTGCT
GCTGCTATTGCTTATGGCTTAGACAAAAAGGTTGGAGCTGAAAGAAACGTGCTGATCTTC
GACTTGGGTGGTGGCACTTTTGATGTGTCAATCCTCACTATTGAGGATGGTATCTTCGAG
GTCAAATCTACAGCTGGAGATACCCACTTGGGTGGAGAGGACTTTGACAATAGAATGGTC
AACCATTTTATTGCAGAGTTCAAGCGCAAGCACAAGAAGGACATCAGCGAGAACAAGAGG
GCTGTCCGTCGCCTCCGTACTGCTTGTGAGCGTGCTAAGCGCACTCTCTCTTCCAGCACT
CAGGCCAGTATTGAGATTGATTCCCTCTATGAAGGAATCGACTTCTATACCTCTATTACT
CGTGCCCGATTTGAAGAATTGAATGCTGACCTGTTCCGTGGCACCCTGGATCCTGTGGAG
AAAGCCCTTCGGGATGCCAAGCTAGACAAGTCTCAGATCCATGACATTGTCCTGGTGGGT
GGCTCAACCCGTATCCCCAAGATCCAGAAGCTTCTGCAGGACTTCTTCAACGGGAAAGAA
CTGAATAAGAGCATCAACCCCGATGAGGCTGTTGCTTATGGTGCAGCTGTGCAGGCAGCC
ATTTTATCTGGAGACAAATCTGAAAATGTTCAAGATTTGCTGCTACTGGATGTCACTCCT
CTTTCCCTTGGCATTGAAACTGCTGGTGGAGTCATGACTGTCCTCATCAAGCGCAATACT
ACCATTCCTACTAAGCAGACGCAGACGTTCACCACCTACTCTGACAACCAGCCTGGTGTG
CTCATTCAGGTTTATGAAGGTGAGCGTGCCATGACCAAGGATAACAACCTGCTTGGCAAG
TTTGAACTCACAGGCATACCTCCGGCCCCACGAGGCGTTCCTCAGATTGAAGTTACTTTT
GATATTGATGCCAATGGCATCCTCAATGTCTCTGCTGTGGATAAGAGCACAGGAAAGGAG
AACAAGATTACCATCACTAATGACAAAGGTCGTTTGAGCAAGGAAGACATTGAGCGCATG
GTCCAGGAAGCTGAGAAGTACAAAGCTGAAGATGAGAAGCAGAGGGATAAGGTGTCTTCT
AAGAATTCACTTGAGTCTTATGCTTTCAACATGAAAGCTACTGTTGAAGATGAAAAACTT
CAAGGCAAGATCAATGATGAGGACAAACAGAAGATTCTTGATAAGTGTAATGAAATAATC
AACTGGCTGGATAAGAACCAGACTGCGGAGAAGGAAGAATTTGAACATCAGCAGAAGGAG
CTGGAGAAAGTCTGCAACCCCATCATTACCAAGCTCTACCAGAGTGCAGGAGGCATGCCA
GGAGGAATGCCTGGGGGCTTCCCTGGGGGCGGAGCTCCTCCATCTGGTGGTGCTTCTTCT
GGGCCCACCATTGAGGAGGTTGACTAAGCCAAACTGGTATAGATTTAGCATTGTTCCACA
TGACATTGAAGGACCCAAATTTGTAGCAAATTCCATGGCAGTTGTAAAGTTGAGCTGCTA
TAGTAAATAACTGGGCATTCTTGATACTTGAATATGGAATATGCACAGGGAAAGGAAATT
ACATTGCACTTTATAAGCACTGTATTGTTAAGTGGAAAATGCAATGTCTTAAATAAAACT
ATTTAAAATTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGTCGGGAGCGCTTCGGGTTGCGGCTTTTTTTCTCTAGCTAAACCAGGCCTACGTTTCA
GCAACCATGTCTAAGGGACCTGCAGTTGGCATTGATCTTGGCACCACCTATTCTTGTGTG
GGTGTCTTCCAGCACGGAAAAGTGGAAATAATTGCTAATGATCAGGGGAACCGAACCACC
CCAAGCTATGTTGCCTTTACTGATACTGAACGATTGATTGGTGATGCTGCGAAGAACCAA
GTTGCGATGAATCCCACCAACACGGTTTTTGATGCCAAACGCCTCATTGGACGAAGATTT
GATGATGCTGTTGTCCAGTCTGATATGAAGCATTGGCCCTTCGTGGTGGTGAATGATGCA
GGCAGGCCTAAGGTCCAAGTAGAATACAAGGGAGAGACAAAAAGTTTCTATCCAGAGGAG
GTGTCATCCATGGTTTTGACAAAGATGAAGGAAATTGCAGAAGCCTACCTTGGGAAGACT
GTTACCAATGCTGTTGTCACAGTACCAGCATACTTTAACGACTCTCAGCGTCAGGCTACC
AAAGATGCTGGAACTATTGCTGGTCTCAATGTACTTAGAATCATCAATGAGCCAACTGCT
GCTGCTATTGCTTATGGCTTAGACAAAAAGGTTGGAGCTGAAAGAAACGTGCTGATCTTC
GACTTGGGTGGTGGCACTTTTGATGTGTCAATCCTCACTATTGAGGATGGTATCTTCGAG
GTCAAATCTACAGCTGGAGATACCCACTTGGGTGGAGAGGACTTTGACAATAGAATGGTC
AACCATTTTATTGCAGAGTTCAAGCGCAAGCACAAGAAGGACATCAGCGAGAACAAGAGG
GCTGTCCGTCGCCTCCGTACTGCTTGTGAGCGTGCTAAGCGCACTCTCTCTTCCAGCACT
CAGGCCAGTATTGAGATTGATTCCCTCTATGAAGGAATCGACTTCTATACCTCTATTACT
CGTGCCCGATTTGAAGAATTGAATGCTGACCTGTTCCGTGGCACCCTGGATCCTGTGGAG
AAAGCCCTTCGGGATGCCAAGCTAGACAAGTCTCAGATCCATGACATTGTCCTGGTGGGT
GGCTCAACCCGTATCCCCAAGATCCAGAAGCTTCTGCAGGACTTCTTCAACGGGAAAGAA
CTGAATAAGAGCATCAACCCCGATGAGGCTGTTGCTTATGGTGCAGCTGTGCAGGCAGCC
ATTTTATCTGGAGACAAATCTGAAAATGTTCAAGATTTGCTGCTACTGGATGTCACTCCT
CTTTCCCTTGGCATTGAAACTGCTGGTGGAGTCATGACTGTCCTCATCAAGCGCAATACT
ACCATTCCTACTAAGCAGACGCAGACGTTCACCACCTACTCTGACAACCAGCCTGGTGTG
CTCATTCAGGTTTATGAAGGTGAGCGTGCCATGACCAAGGATAACAACCTGCTTGGCAAG
TTTGAACTCACAGGCATACCTCCGGCCCCACGAGGCGTTCCTCAGATTGAAGTTACTTTT
GATATTGATGCCAATGGCATCCTCAATGTCTCTGCTGTGGATAAGAGCACAGGAAAGGAG
AACAAGATTACCATCACTAATGACAAAGGTCGTTTGAGCAAGGAAGACATTGAGCGCATG
GTCCAGGAAGCTGAGAAGTACAAAGCTGAAGATGAGAAGCAGAGGGATAAGGTGTCTTCT
AAGAATTCACTTGAGTCTTATGCTTTCAACATGAAAGCTACTGTTGAAGATGAAAAACTT
CAAGGCAAGATCAATGATGAGGACAAACAGAAGATTCTTGATAAGTGTAATGAAATAATC
AACTGGCTGGATAAGAACCAGACTGCGGAGAAGGAAGAATTTGAACATCAGCAGAAGGAG
CTGGAGAAAGTCTGCAACCCCATCATTACCAAGCTCTACCAGAGTGCAGGAGGCATGCCA
GGAGGAATGCCTGGGGGCTTCCCTGGGGGCGGAGCTCCTCCATCTGGTGGTGCTTCTTCT
GGGCCCACCATTGAGGAGGTTGACTAAGCCAAACTGGTATAGATTTAGCATTGTTCCACA
TGACATTGAAGGACCCAAATTTGTAGCAAATTCCATGGCAGTTGTAAAGTTGAGCTGCTA
TAGTAAATAACTGGGCATTCTTGATACTTGAATATGGAATATGCACAGGGAAAGGAAATT
ACATTGCACTTTATAAGCACTGTATTGTTAAGTGGAAAATGCAATGTCTTAAATAAAACT
ATTTAAAATTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5RA83_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5RA83_PONPY

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               364-2252, - strand, RNAz p=0.994607
               

               
               678-997, - strand, RNAz p=0.770383
               

               
               1438-1557, - strand, RNAz p=0.666216
               

               
               1909-2026, - strand, RNAz p=0.974676

Predicted RNA structure(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               364-2252, - strand, RNAz p=0.994607
               

               
               678-997, - strand, RNAz p=0.770383
               

               
               1438-1557, - strand, RNAz p=0.666216
               

               
               1909-2026, - strand, RNAz p=0.974676

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               49-1901, gnl|bosTau2|chr10 (51572812-51570951)
               

               
               49-1901, gnl|Hg17|chr14 (64077307-64079164)
               

               
               49-1901, gnl|Mm7|chr12 (74362701-74364563)
               


               
               1909-2262, gnl|bosTau2|chr28 (1270736-1271091)
               

               
               1909-2262, gnl|Hg17|chr7 (10266020-10266383)
               

               
               1909-2262, gnl|Mm7|chr1 (38123319-38123617)
               


               
               2104-2253, gnl|bosTau2|chr13 (24662455-24662617)
               

               
               2104-2253, gnl|Hg17|chr7 (10266225-10266370)
               

               
               2104-2253, gnl|Mm7|chrX (53217336-53217173)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-1901, gnl|bosTau2|chr10 (51572812-51570951)
               

               
               49-1901, gnl|Hg17|chr14 (64077307-64079164)
               

               
               49-1901, gnl|Mm7|chr12 (74362701-74364563)
               


               
               1909-2262, gnl|bosTau2|chr28 (1270736-1271091)
               

               
               1909-2262, gnl|Hg17|chr7 (10266020-10266383)
               

               
               1909-2262, gnl|Mm7|chr1 (38123319-38123617)
               


               
               2104-2253, gnl|bosTau2|chr13 (24662455-24662617)
               

               
               2104-2253, gnl|Hg17|chr7 (10266225-10266370)
               

               
               2104-2253, gnl|Mm7|chrX (53217336-53217173)

Expressed library(ies): 91 entry(ies)

More info

Expressed library(ies): 91 entry(ies)

Help | Less info


               
               cje (5.28751)
               

               
               liv (3.65711)
               

               
               sto (3.59648)
               

               
               cbe (3.11005)
               

               
               ldo (2.61907)
               

               
               fcc (2.5712)
               

               
               ste (2.56896)
               

               
               tbr (2.46685)
               

               
               isp (2.40601)
               

               
               hyp (2.28539)
               

               
               ova (2.19525)
               

               
               cst (2.10055)
               

               
               che (2.04471)
               

               
               fco (2.0437)
               

               
               lin (2.03844)
               

               
               sug (2.03666)
               

               
               vin (1.99534)
               

               
               csk (1.97044)
               

               
               bfe (1.94815)
               

               
               spc (1.92722)
               

               
               nms (1.92472)
               

               
               spl (1.8614)
               

               
               tra (1.84638)
               

               
               ret (1.80227)
               

               
               col (1.75507)
               

               
               sin (1.74948)
               

               
               lyg (1.73033)
               

               
               cut (1.69924)
               

               
               cty (1.66528)
               

               
               cki (1.65235)
               

               
               fhi (1.5262)
               

               
               cte (1.4637)
               

               
               ebs (1.41961)
               

               
               cmu (1.30475)
               

               
               thg (1.26791)
               

               
               fbs (1.22742)
               

               
               nmm (1.19522)
               

               
               kid (1.16762)
               

               
               nje (1.16144)
               

               
               mgp (1.1534)
               

               
               nbm (1.09257)
               

               
               ssp (1.08416)
               

               
               pgl (1.06635)
               

               
               ill (1.05356)
               

               
               eye (1.02302)
               

               
               jej (0.989218)
               

               
               nlu (0.958405)
               

               
               nca (0.958117)
               

               
               sme (0.91631)
               

               
               lun (0.902935)
               

               
               bla (0.87043)
               

               
               rec (0.865351)
               

               
               tes (0.831255)
               

               
               hea (0.817996)
               

               
               fce (0.814775)
               

               
               aor (0.781097)
               

               
               elu (0.770713)
               

               
               ese (0.759013)
               

               
               nep (0.7357)
               

               
               ski (0.733676)
               

               
               gul (0.710353)
               

               
               fty (0.703359)
               

               
               ton (0.702001)
               

               
               ece (0.687916)
               

               
               nco (0.646935)
               

               
               med (0.58126)
               

               
               lnt (0.569233)
               

               
               hlv (0.557025)
               

               
               duo (0.518403)
               

               
               pro (0.512033)
               

               
               eje (0.494169)
               

               
               csp (0.483559)
               

               
               mga (0.480615)
               

               
               eru (0.480192)
               

               
               clu (0.478583)
               

               
               eli (0.455443)
               

               
               pty (0.428143)
               

               
               eep (0.367692)
               

               
               mgm (0.360685)
               

               
               jca (0.34188)
               

               
               mcp (0.341297)
               

               
               cag (0.302389)
               

               
               fat (0.294855)
               

               
               ute (0.265569)
               

               
               cly (0.241284)
               

               
               pan (0.23596)
               

               
               ecc (0.23007)
               

               
               fli (0.202881)
               

               
               sag (0.182715)
               

               
               cli (0.152812)
               

               
               cbl (0.114797)

Expressed library(ies): 91 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (5.28751)
               

               
               liv (3.65711)
               

               
               sto (3.59648)
               

               
               cbe (3.11005)
               

               
               ldo (2.61907)
               

               
               fcc (2.5712)
               

               
               ste (2.56896)
               

               
               tbr (2.46685)
               

               
               isp (2.40601)
               

               
               hyp (2.28539)
               

               
               ova (2.19525)
               

               
               cst (2.10055)
               

               
               che (2.04471)
               

               
               fco (2.0437)
               

               
               lin (2.03844)
               

               
               sug (2.03666)
               

               
               vin (1.99534)
               

               
               csk (1.97044)
               

               
               bfe (1.94815)
               

               
               spc (1.92722)
               

               
               nms (1.92472)
               

               
               spl (1.8614)
               

               
               tra (1.84638)
               

               
               ret (1.80227)
               

               
               col (1.75507)
               

               
               sin (1.74948)
               

               
               lyg (1.73033)
               

               
               cut (1.69924)
               

               
               cty (1.66528)
               

               
               cki (1.65235)
               

               
               fhi (1.5262)
               

               
               cte (1.4637)
               

               
               ebs (1.41961)
               

               
               cmu (1.30475)
               

               
               thg (1.26791)
               

               
               fbs (1.22742)
               

               
               nmm (1.19522)
               

               
               kid (1.16762)
               

               
               nje (1.16144)
               

               
               mgp (1.1534)
               

               
               nbm (1.09257)
               

               
               ssp (1.08416)
               

               
               pgl (1.06635)
               

               
               ill (1.05356)
               

               
               eye (1.02302)
               

               
               jej (0.989218)
               

               
               nlu (0.958405)
               

               
               nca (0.958117)
               

               
               sme (0.91631)
               

               
               lun (0.902935)
               

               
               bla (0.87043)
               

               
               rec (0.865351)
               

               
               tes (0.831255)
               

               
               hea (0.817996)
               

               
               fce (0.814775)
               

               
               aor (0.781097)
               

               
               elu (0.770713)
               

               
               ese (0.759013)
               

               
               nep (0.7357)
               

               
               ski (0.733676)
               

               
               gul (0.710353)
               

               
               fty (0.703359)
               

               
               ton (0.702001)
               

               
               ece (0.687916)
               

               
               nco (0.646935)
               

               
               med (0.58126)
               

               
               lnt (0.569233)
               

               
               hlv (0.557025)
               

               
               duo (0.518403)
               

               
               pro (0.512033)
               

               
               eje (0.494169)
               

               
               csp (0.483559)
               

               
               mga (0.480615)
               

               
               eru (0.480192)
               

               
               clu (0.478583)
               

               
               eli (0.455443)
               

               
               pty (0.428143)
               

               
               eep (0.367692)
               

               
               mgm (0.360685)
               

               
               jca (0.34188)
               

               
               mcp (0.341297)
               

               
               cag (0.302389)
               

               
               fat (0.294855)
               

               
               ute (0.265569)
               

               
               cly (0.241284)
               

               
               pan (0.23596)
               

               
               ecc (0.23007)
               

               
               fli (0.202881)
               

               
               sag (0.182715)
               

               
               cli (0.152812)
               

               
               cbl (0.114797)

	364-2252, - strand, RNAz p=0.994607
	678-997, - strand, RNAz p=0.770383
	1438-1557, - strand, RNAz p=0.666216
	1909-2026, - strand, RNAz p=0.974676

	49-1901, gnl\|bosTau2\|chr10 (51572812-51570951)
	49-1901, gnl\|Hg17\|chr14 (64077307-64079164)
	49-1901, gnl\|Mm7\|chr12 (74362701-74364563)

	1909-2262, gnl\|bosTau2\|chr28 (1270736-1271091)
	1909-2262, gnl\|Hg17\|chr7 (10266020-10266383)
	1909-2262, gnl\|Mm7\|chr1 (38123319-38123617)

	2104-2253, gnl\|bosTau2\|chr13 (24662455-24662617)
	2104-2253, gnl\|Hg17\|chr7 (10266225-10266370)
	2104-2253, gnl\|Mm7\|chrX (53217336-53217173)

	cje (5.28751)
	liv (3.65711)
	sto (3.59648)
	cbe (3.11005)
	ldo (2.61907)
	fcc (2.5712)
	ste (2.56896)
	tbr (2.46685)
	isp (2.40601)
	hyp (2.28539)
	ova (2.19525)
	cst (2.10055)
	che (2.04471)
	fco (2.0437)
	lin (2.03844)
	sug (2.03666)
	vin (1.99534)
	csk (1.97044)
	bfe (1.94815)
	spc (1.92722)
	nms (1.92472)
	spl (1.8614)
	tra (1.84638)
	ret (1.80227)
	col (1.75507)
	sin (1.74948)
	lyg (1.73033)
	cut (1.69924)
	cty (1.66528)
	cki (1.65235)
	fhi (1.5262)
	cte (1.4637)
	ebs (1.41961)
	cmu (1.30475)
	thg (1.26791)
	fbs (1.22742)
	nmm (1.19522)
	kid (1.16762)
	nje (1.16144)
	mgp (1.1534)
	nbm (1.09257)
	ssp (1.08416)
	pgl (1.06635)
	ill (1.05356)
	eye (1.02302)
	jej (0.989218)
	nlu (0.958405)
	nca (0.958117)
	sme (0.91631)
	lun (0.902935)
	bla (0.87043)
	rec (0.865351)
	tes (0.831255)
	hea (0.817996)
	fce (0.814775)
	aor (0.781097)
	elu (0.770713)
	ese (0.759013)
	nep (0.7357)
	ski (0.733676)
	gul (0.710353)
	fty (0.703359)
	ton (0.702001)
	ece (0.687916)
	nco (0.646935)
	med (0.58126)
	lnt (0.569233)
	hlv (0.557025)
	duo (0.518403)
	pro (0.512033)
	eje (0.494169)
	csp (0.483559)
	mga (0.480615)
	eru (0.480192)
	clu (0.478583)
	eli (0.455443)
	pty (0.428143)
	eep (0.367692)
	mgm (0.360685)
	jca (0.34188)
	mcp (0.341297)
	cag (0.302389)
	fat (0.294855)
	ute (0.265569)
	cly (0.241284)
	pan (0.23596)
	ecc (0.23007)
	fli (0.202881)
	sag (0.182715)
	cli (0.152812)
	cbl (0.114797)