Ss1.1-Lng1-LNG010001H05.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCACGCACCCGCCTCGACACAGAATCTCCGCAGATTCCAAAGATGCGGGTCAGGGGCC CTCAAGCCATCCTCATTCTGCTGTCGGGGGCCCTGGCCCTGACCGGGACCTGGGCGGGTC CCCACTCCCTGAGGTATTTCCACACCGCCGTGTCCCGGCCCGACCGCGGGGACTCCCGCT TCCTCACCGTCGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCCCGA ATCCGAGGAAAGAGCCGCGGGCGCCGTGGATAGAGCAGGAGGGGCAGGACTATTGGGATC GGGAGACACAGATCAGCAAGGACAACGCAGAGATTAACCGAGTGGACCTGAAGACCCTGC GCGGCTACTACAACCAGAGCGAGGCCGGGTCTCACACCATCCAGAGCATGTACGGCTGCG ACGTGGGGCCAGACGGGCTCCTCCTCCGCGGGTACAGTCAGGACGCCTACGACGGCGCCG ATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACTGCGGCTCAGA TCACCAAGCGCAAGTGGGAGGCGGCCGATGTGGCGGAGCAGGAGAGGAGCTACCTGGAGG GCACGTGTGTGGAGTGGCTCCAGAAATACCTGCAGATGGGGAAGGACACGCTGCAGCGCG CAGAGCCTCCAAAGACACATGTGACCCGCCACCCCAGCTCTGACCTGGGGGTCACCTTGA GGTGCTGGGCCCTGGGCTTCTACCCTAAGGAGATCTCCCTGACCTGGCAGCGCGAGGGCC AGGACCAGAGCCAGGACATGGAGCTGGTGGAGACCAGGCCCTCAGGGGATGGGACCTTCC AGAAGTGGGCGGCCCTGGTGGTGCCTCCTGGAGAGGAGCAGAGCTACACCTGCCATGTGC AGCACGAGGGCCTGCAGGAGCCCCTCACCCTGAGATGGGAACCTCCACAGCCCCCCGTCC CCATCGTGGGCATCTTTGTTGGCCTGGTTCTCGTCCTGGTCGCTGGAGCCATGGTGGCTG GAGTTGTGATCTGGAGGAAGAAGCGCTCAGCTGAAAAAGGAGGGAGCTACACTCAGGCTG CAGGCAGGGACAGTGCCCAGAGCTCTGGTGTGTCCCTCATCAAGGATCCTAGAGTGTGAG ACAGCTGCCTTGTGGGGACCAAGTGTTACGAGATTCGTTCACATCCCACTTTGTGACTTC AGATCCCCTGACTCCTGTTTCTGCAGCAGCATTTGAGTGTGTCTGTGTCCCTATGAGCAT CATGAGAGGAGGTGGGGACCCTGGCCCAGCCCTGTCCCCCACGTCCCCTCCTCACCCTGA CCTGTGTTCTCTTCCCTGATCCTCTTTCCAGTTCTCGCAAGTGGGAGCCGGGCGGGAGGG GGGGGGTGGCGGGGCGGCCACTGGACCATCTCCATCCTTATCTTAACTTCACTGCCCTGA GTAATTAATGTCTTCCTGTAGGAAGTAAAATCTCTGTTGAATTTGCTTTTTCTAATCAGT GCCATGAGGAGTTGAGGGGATGATAAATGAGAGATTTCCTAAGTTTGAAAGAGGGAAATA AGTGGAAGGACCTTCCAGAATCCACATGTGTGCTGTGCTGCCTCTGTTCCAGGTGGGATG TGAGCAGAGAAACATGGACGGGGCCTGTGCCCAGTGAGAGCTCAGGGCATCATGGGCTTC AGTGTGGACATTCCCAGGCTGGGCCATCTTTTCTGTCCCTTTGTCTTTGTCCTTTCAGGA GAACTTTCTTCCACCAGGCCCTGTGATCTCAGGGACTGAGAAGTCCCCTGGGCCTTGTCC TGTATTCAGGAGCTTGGTTAGCAAGGGCCTCCTGTCACCAGGTAGCCTACGCTCCAGCCT TGGTTGCATCATTAATCCCTTTATCCTGCATTTGTATTTGGCCTATTGAGATTTTTAAAA AATACGGACTGTTCTTTTAATGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCACGCACCCGCCTCGACACAGAATCTCCGCAGATTCCAAAGATGCGGGTCAGGGGCC CTCAAGCCATCCTCATTCTGCTGTCGGGGGCCCTGGCCCTGACCGGGACCTGGGCGGGTC CCCACTCCCTGAGGTATTTCCACACCGCCGTGTCCCGGCCCGACCGCGGGGACTCCCGCT TCCTCACCGTCGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCCCGA ATCCGAGGAAAGAGCCGCGGGCGCCGTGGATAGAGCAGGAGGGGCAGGACTATTGGGATC GGGAGACACAGATCAGCAAGGACAACGCAGAGATTAACCGAGTGGACCTGAAGACCCTGC GCGGCTACTACAACCAGAGCGAGGCCGGGTCTCACACCATCCAGAGCATGTACGGCTGCG ACGTGGGGCCAGACGGGCTCCTCCTCCGCGGGTACAGTCAGGACGCCTACGACGGCGCCG ATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACTGCGGCTCAGA TCACCAAGCGCAAGTGGGAGGCGGCCGATGTGGCGGAGCAGGAGAGGAGCTACCTGGAGG GCACGTGTGTGGAGTGGCTCCAGAAATACCTGCAGATGGGGAAGGACACGCTGCAGCGCG CAGAGCCTCCAAAGACACATGTGACCCGCCACCCCAGCTCTGACCTGGGGGTCACCTTGA GGTGCTGGGCCCTGGGCTTCTACCCTAAGGAGATCTCCCTGACCTGGCAGCGCGAGGGCC AGGACCAGAGCCAGGACATGGAGCTGGTGGAGACCAGGCCCTCAGGGGATGGGACCTTCC AGAAGTGGGCGGCCCTGGTGGTGCCTCCTGGAGAGGAGCAGAGCTACACCTGCCATGTGC AGCACGAGGGCCTGCAGGAGCCCCTCACCCTGAGATGGGAACCTCCACAGCCCCCCGTCC CCATCGTGGGCATCTTTGTTGGCCTGGTTCTCGTCCTGGTCGCTGGAGCCATGGTGGCTG GAGTTGTGATCTGGAGGAAGAAGCGCTCAGCTGAAAAAGGAGGGAGCTACACTCAGGCTG CAGGCAGGGACAGTGCCCAGAGCTCTGGTGTGTCCCTCATCAAGGATCCTAGAGTGTGAG ACAGCTGCCTTGTGGGGACCAAGTGTTACGAGATTCGTTCACATCCCACTTTGTGACTTC AGATCCCCTGACTCCTGTTTCTGCAGCAGCATTTGAGTGTGTCTGTGTCCCTATGAGCAT CATGAGAGGAGGTGGGGACCCTGGCCCAGCCCTGTCCCCCACGTCCCCTCCTCACCCTGA CCTGTGTTCTCTTCCCTGATCCTCTTTCCAGTTCTCGCAAGTGGGAGCCGGGCGGGAGGG GGGGGGTGGCGGGGCGGCCACTGGACCATCTCCATCCTTATCTTAACTTCACTGCCCTGA GTAATTAATGTCTTCCTGTAGGAAGTAAAATCTCTGTTGAATTTGCTTTTTCTAATCAGT GCCATGAGGAGTTGAGGGGATGATAAATGAGAGATTTCCTAAGTTTGAAAGAGGGAAATA AGTGGAAGGACCTTCCAGAATCCACATGTGTGCTGTGCTGCCTCTGTTCCAGGTGGGATG TGAGCAGAGAAACATGGACGGGGCCTGTGCCCAGTGAGAGCTCAGGGCATCATGGGCTTC AGTGTGGACATTCCCAGGCTGGGCCATCTTTTCTGTCCCTTTGTCTTTGTCCTTTCAGGA GAACTTTCTTCCACCAGGCCCTGTGATCTCAGGGACTGAGAAGTCCCCTGGGCCTTGTCC TGTATTCAGGAGCTTGGTTAGCAAGGGCCTCCTGTCACCAGGTAGCCTACGCTCCAGCCT TGGTTGCATCATTAATCCCTTTATCCTGCATTTGTATTTGGCCTATTGAGATTTTTAAAA AATACGGACTGTTCTTTTAATGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 760-928, - strand, RNAz p=0.996054 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 760-928, - strand, RNAz p=0.996054 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 116-388, gnl|bosTau2|chr23 (23096967-23096696) | |
| 116-388, gnl|Hg17|chr6 (29903802-29904073) | |
| 116-388, gnl|Mm7|chr17 (34516576-34516305) | |
| 421-671, gnl|bosTau2|chr20 (36655627-36655873) | |
| 421-671, gnl|Hg17|chr6 (31347071-31346829) | |
| 421-671, gnl|Mm7|chr17 (32077846-32077606) | |
| 721-928, gnl|bosTau2|chr23 (24252946-24252736) | |
| 721-928, gnl|Hg17|chr6 (26200946-26201156) | |
| 721-928, gnl|Mm7|chr13 (23071884-23071674) | |
| 939-1066, gnl|bosTau2|chr23 (23093378-23093250) | |
| 939-1066, gnl|canFam2|chr12 (4016596-4016330) | |
| 939-1066, gnl|dasNov1|scaffold_10933 (47434-47692) | |
| 939-1066, gnl|echTel1|scaffold_220899 (9306-9020) | |
| 939-1066, gnl|galGal2|chr16_random (560492-560746) | |
| 939-1066, gnl|hg17|chr6 (29905404-29905712) | |
| 939-1066, gnl|Hg17|chr6 (29905571-29905709) | |
| 939-1066, gnl|loxAfr1|scaffold_35258 (6100-5803) | |
| 939-1066, gnl|mm7|chr17 (33494436-33494750) | |
| 939-1066, gnl|Mm7|chr17 (34514838-34514720) | |
| 939-1066, gnl|monDom2|scaffold_42 (15613369-15613654) | |
| 939-1066, gnl|oryCun1|scaffold_176700 (53039-53340) | |
| 939-1066, gnl|panTro1|chr5_random (23160096-23159804) | |
| 939-1066, gnl|rheMac2|chr4 (30965431-30965141) | |
| 939-1066, gnl|rn3|chr20_random (38116-37829) | |
| 1133-1371, gnl|bosTau2|chr23 (24592887-24593114) | |
| 1133-1371, gnl|Hg17|chr6 (30338262-30338523) | |
| 1133-1371, gnl|Mm7|chr17 (33574982-33575239) | |
| 1401-1944, gnl|bosTau2|chr23 (24593111-24593671) | |
| 1401-1944, gnl|Hg17|chr6 (30338520-30339058) | |
| 1401-1944, gnl|Mm7|chr17 (33575236-33575761) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 116-388, gnl|bosTau2|chr23 (23096967-23096696) | |
| 116-388, gnl|Hg17|chr6 (29903802-29904073) | |
| 116-388, gnl|Mm7|chr17 (34516576-34516305) | |
| 421-671, gnl|bosTau2|chr20 (36655627-36655873) | |
| 421-671, gnl|Hg17|chr6 (31347071-31346829) | |
| 421-671, gnl|Mm7|chr17 (32077846-32077606) | |
| 721-928, gnl|bosTau2|chr23 (24252946-24252736) | |
| 721-928, gnl|Hg17|chr6 (26200946-26201156) | |
| 721-928, gnl|Mm7|chr13 (23071884-23071674) | |
| 939-1066, gnl|bosTau2|chr23 (23093378-23093250) | |
| 939-1066, gnl|canFam2|chr12 (4016596-4016330) | |
| 939-1066, gnl|dasNov1|scaffold_10933 (47434-47692) | |
| 939-1066, gnl|echTel1|scaffold_220899 (9306-9020) | |
| 939-1066, gnl|galGal2|chr16_random (560492-560746) | |
| 939-1066, gnl|hg17|chr6 (29905404-29905712) | |
| 939-1066, gnl|Hg17|chr6 (29905571-29905709) | |
| 939-1066, gnl|loxAfr1|scaffold_35258 (6100-5803) | |
| 939-1066, gnl|mm7|chr17 (33494436-33494750) | |
| 939-1066, gnl|Mm7|chr17 (34514838-34514720) | |
| 939-1066, gnl|monDom2|scaffold_42 (15613369-15613654) | |
| 939-1066, gnl|oryCun1|scaffold_176700 (53039-53340) | |
| 939-1066, gnl|panTro1|chr5_random (23160096-23159804) | |
| 939-1066, gnl|rheMac2|chr4 (30965431-30965141) | |
| 939-1066, gnl|rn3|chr20_random (38116-37829) | |
| 1133-1371, gnl|bosTau2|chr23 (24592887-24593114) | |
| 1133-1371, gnl|Hg17|chr6 (30338262-30338523) | |
| 1133-1371, gnl|Mm7|chr17 (33574982-33575239) | |
| 1401-1944, gnl|bosTau2|chr23 (24593111-24593671) | |
| 1401-1944, gnl|Hg17|chr6 (30338520-30339058) | |
| 1401-1944, gnl|Mm7|chr17 (33575236-33575761) |
| Expressed library(ies): 33 entry(ies) | More info |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
| cag (1.05836) | |
| cly (0.603209) | |
| jej (0.593531) | |
| duo (0.518403) | |
| csp (0.483559) | |
| clu (0.478583) | |
| hlv (0.417769) | |
| elu (0.385356) | |
| ton (0.351) | |
| jca (0.34188) | |
| hyp (0.285673) | |
| pgl (0.236967) | |
| hea (0.204499) | |
| fli (0.202881) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| nje (0.16592) | |
| cje (0.165235) | |
| cki (0.165235) | |
| nco (0.161734) | |
| cli (0.152812) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| che (0.136314) | |
| cov (0.132153) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| nbm (0.0993246) |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (1.05836) | |
| cly (0.603209) | |
| jej (0.593531) | |
| duo (0.518403) | |
| csp (0.483559) | |
| clu (0.478583) | |
| hlv (0.417769) | |
| elu (0.385356) | |
| ton (0.351) | |
| jca (0.34188) | |
| hyp (0.285673) | |
| pgl (0.236967) | |
| hea (0.204499) | |
| fli (0.202881) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| nje (0.16592) | |
| cje (0.165235) | |
| cki (0.165235) | |
| nco (0.161734) | |
| cli (0.152812) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| che (0.136314) | |
| cov (0.132153) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| nbm (0.0993246) |