Ss1.1-Lng1-LNG010013F05.5
|
CTTCAAAAACTTTATTTTTGTCTCATCCATCAAGGGCACAGGGTGCCTCACATTTTGCTT
GCTTCTCCTCAGACTGTTCCACCACCTAAATCCAGATATAACACGGTTCCCTGGAACCAA
AAAATATTTTTCCCTTTTGCGTTAAAAATTAAGAGCACGCTCGAAGTGTCGAAGCGCAAG
CTGCACTACTTAAGCAGCAGATTCCAAGCTGCCCCGTAAAATACTACATCTGGATGCAGA
CTTGCGGGAGGAAGTTCAAGAGTCATGCACTTGCGTGGTAACTCAAAGAGACTTCTCACC
ATGGCTGTTATGCTATAGAAGCTGCAACACACAAGACATTCCAGTGTCTGGAATCTCTGT
TCTCCCAAGCACAACACATTCATGATCAGAAGTGGCTATGAAGCAACCAGTTCATTACAC
TGTAGCAGATCCCACTTCAGACACCTCATAAAAGTTACCAAGACTCCGAAACCTATACCA
GCTTGCCTCTCTCAGTTAACACTTAAATCTGAAACTCAGCCCAACTTAAACCACAGAACT
ATTTTCTCAGGGCTTACACGTCTCTTTACAGCTACTGCCTTTAAATTAAGCGTGCTTCTG
GTCTGATGACTTGGTGTGGTTCTCGTGCCCATGTCTCCCTAACATCATTTCTGCTCCCCT
GGCAGCCAATGTTGGTCAGGAACACTAGTTTCACCCCAAGTTCTATACCTGCAGAACTTG
CTGTATAGACATCTATGAATGTGCTTCAGGAGCAGATCCCAAATCTGAGTTCTAGAATTT
CAAAGAAACCTTGGATAAAAGTATTTTTATTGACAATATGGGGAAGTGGAAGGAGCATAT
TAACAATACACTGCAAAGCCTACACTGCAAATACGCAGTCATGGCATTTTTATAGAGCAC
AAGGCTATTTACACGCTTTGAAGAATTACCTCTGTAAAATAAAAAGTTCTGTCTACCAAG
CAACACCTGAAATAAACTAAAGCACCTAGATAACAGATGTATTAAAATTTTGCACAATTT
AGGTTTTTGACACTTAGTTGGATAAACAAGTTTATTTGTAAATTTAGTCAACATACATAA
TTGACCTAAAAACTTCAATAGAAGGATAAATTTTAAAACCACTTGGAAAGCCATCTCTAT
GAAGTGATTTTCCCAGGACCTTATACCAGATGACACCATTTTAACTGGCAGAGGTTCCAT
AAGCTGGCGCTGTGTCCCTTCCCCACAGCAACTTTACCCCAAAGGTTTATCATAATACAA
ACTCGATGGAAAAGCTCAGTTTTGTTCCCTCTTGATAGAGAAAAACTCAATCTAGTTATG
AGACCAACCACAACACAAAGAAAAGCTGTACTAACTACTATATTAGTAACAGACAATGCT
GGTGTGAATAACGTGTATTATATTCTAGAGCCCTTATAAATAAAATCCCCCGTTAGTGTT
TGCATTATCAGCTAGAGGGTAGTTAACATGTGGTAGAATGAGGACTTATGCAAGGTATAA
TGCGCAAAGCATTTTTACTAGGTATGAAAACAAGTGCAGTCTAGTTAGGAGAAAACCAAC
CGGACTCTAAATTACACACAATCTTAATGACAAGACTCCCCACCAAAGGTGAATGTAAAA
CATTTAATTTAAAAATGTTGACACTACAATATATAAAATAGCTATTATAAATGCACATAG
TGTATTCTATAGCTGCCAGGTTTACTTCTTTTTTTTCTTTTTCTTTTTTTTTTAAGGAAA
CTGTAAGTTACACTGTGGTTAAGACTTGTATCTTCACCCTTGAAAAAGCCCACATTCTAT
CACAGTGATGTATGGTCAGACTTAACAGCCCCAATTGTTAAACACTTGGATCAAGTCATA
ACCAGTTTTATTGCAAAAGGACCCTGTACACATTTATCAATTCTAGTACCTTAATAGCTA
CCCAACAAGTCATTAACATACAGAAACATGCATCATGAGAAGCAAGAAATATCACCCATC
CCTTCTGCATATTAGCAACTTGTCACTCCTGAGCAACAGTGCTCACATCACTGAGGTCTG
TGAACAGTCACTTTTCGCATTCATCCTGAGTGAAAGATGGAATGACTTAAGTACAAATGC
AACATATTATAAACAATTTCTTACAAAAAAAGTCACAAATTAAACCAAAGTATTTTACAG
AATTTACTACAAAACACCATAAAAACTGCCTTCACTTAAGCTCTCTCTCCCCGTATCCGG
CGAGCCAACTGGATGTCTTTGGGCATGATGGTGACTCTCTTAGCGTGGATGGCACACAGA
TTGGTATCTTCAAATAAACCCACCAGGTACGCTTCACTAGCCTCCTGAAGCGCACCAATG
GCGGCGCTCTGGAACCTCAAGTCAGTTTTGAAATCCTGGGCGATCTCCCTCACCAACCTC
TGGAAGGGCAGCTTCCGGATCAGAAGCTCCGTGGACTTTTGGTAACGACGGATTTCTCGA
AGCGCGACGGTCCCGGGCCTGTAGCGATGAGGTTTTTTCACCCCGCCGGTAGAGGGAGCG
CTTTTCCTGGCAGCTTTAGTGGCCAGCTGTTTGCGGGGCGCTTTCCCACCCGTGGACTTA
CGAGCAGTCTGCTTGGTTCGGGCCATTTTCTTTTACCCAACAGCGAAGTCTGAGGCCGCT
TCCCCCACCGCCGTGCCGCTCCCGCCGCCCAATGAAGAGCCGCAGTCGCCGAACCAAAGC
AAGAAGCAACTCCAACGAACGACCAAACCGCTCTGC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTTCAAAAACTTTATTTTTGTCTCATCCATCAAGGGCACAGGGTGCCTCACATTTTGCTT
GCTTCTCCTCAGACTGTTCCACCACCTAAATCCAGATATAACACGGTTCCCTGGAACCAA
AAAATATTTTTCCCTTTTGCGTTAAAAATTAAGAGCACGCTCGAAGTGTCGAAGCGCAAG
CTGCACTACTTAAGCAGCAGATTCCAAGCTGCCCCGTAAAATACTACATCTGGATGCAGA
CTTGCGGGAGGAAGTTCAAGAGTCATGCACTTGCGTGGTAACTCAAAGAGACTTCTCACC
ATGGCTGTTATGCTATAGAAGCTGCAACACACAAGACATTCCAGTGTCTGGAATCTCTGT
TCTCCCAAGCACAACACATTCATGATCAGAAGTGGCTATGAAGCAACCAGTTCATTACAC
TGTAGCAGATCCCACTTCAGACACCTCATAAAAGTTACCAAGACTCCGAAACCTATACCA
GCTTGCCTCTCTCAGTTAACACTTAAATCTGAAACTCAGCCCAACTTAAACCACAGAACT
ATTTTCTCAGGGCTTACACGTCTCTTTACAGCTACTGCCTTTAAATTAAGCGTGCTTCTG
GTCTGATGACTTGGTGTGGTTCTCGTGCCCATGTCTCCCTAACATCATTTCTGCTCCCCT
GGCAGCCAATGTTGGTCAGGAACACTAGTTTCACCCCAAGTTCTATACCTGCAGAACTTG
CTGTATAGACATCTATGAATGTGCTTCAGGAGCAGATCCCAAATCTGAGTTCTAGAATTT
CAAAGAAACCTTGGATAAAAGTATTTTTATTGACAATATGGGGAAGTGGAAGGAGCATAT
TAACAATACACTGCAAAGCCTACACTGCAAATACGCAGTCATGGCATTTTTATAGAGCAC
AAGGCTATTTACACGCTTTGAAGAATTACCTCTGTAAAATAAAAAGTTCTGTCTACCAAG
CAACACCTGAAATAAACTAAAGCACCTAGATAACAGATGTATTAAAATTTTGCACAATTT
AGGTTTTTGACACTTAGTTGGATAAACAAGTTTATTTGTAAATTTAGTCAACATACATAA
TTGACCTAAAAACTTCAATAGAAGGATAAATTTTAAAACCACTTGGAAAGCCATCTCTAT
GAAGTGATTTTCCCAGGACCTTATACCAGATGACACCATTTTAACTGGCAGAGGTTCCAT
AAGCTGGCGCTGTGTCCCTTCCCCACAGCAACTTTACCCCAAAGGTTTATCATAATACAA
ACTCGATGGAAAAGCTCAGTTTTGTTCCCTCTTGATAGAGAAAAACTCAATCTAGTTATG
AGACCAACCACAACACAAAGAAAAGCTGTACTAACTACTATATTAGTAACAGACAATGCT
GGTGTGAATAACGTGTATTATATTCTAGAGCCCTTATAAATAAAATCCCCCGTTAGTGTT
TGCATTATCAGCTAGAGGGTAGTTAACATGTGGTAGAATGAGGACTTATGCAAGGTATAA
TGCGCAAAGCATTTTTACTAGGTATGAAAACAAGTGCAGTCTAGTTAGGAGAAAACCAAC
CGGACTCTAAATTACACACAATCTTAATGACAAGACTCCCCACCAAAGGTGAATGTAAAA
CATTTAATTTAAAAATGTTGACACTACAATATATAAAATAGCTATTATAAATGCACATAG
TGTATTCTATAGCTGCCAGGTTTACTTCTTTTTTTTCTTTTTCTTTTTTTTTTAAGGAAA
CTGTAAGTTACACTGTGGTTAAGACTTGTATCTTCACCCTTGAAAAAGCCCACATTCTAT
CACAGTGATGTATGGTCAGACTTAACAGCCCCAATTGTTAAACACTTGGATCAAGTCATA
ACCAGTTTTATTGCAAAAGGACCCTGTACACATTTATCAATTCTAGTACCTTAATAGCTA
CCCAACAAGTCATTAACATACAGAAACATGCATCATGAGAAGCAAGAAATATCACCCATC
CCTTCTGCATATTAGCAACTTGTCACTCCTGAGCAACAGTGCTCACATCACTGAGGTCTG
TGAACAGTCACTTTTCGCATTCATCCTGAGTGAAAGATGGAATGACTTAAGTACAAATGC
AACATATTATAAACAATTTCTTACAAAAAAAGTCACAAATTAAACCAAAGTATTTTACAG
AATTTACTACAAAACACCATAAAAACTGCCTTCACTTAAGCTCTCTCTCCCCGTATCCGG
CGAGCCAACTGGATGTCTTTGGGCATGATGGTGACTCTCTTAGCGTGGATGGCACACAGA
TTGGTATCTTCAAATAAACCCACCAGGTACGCTTCACTAGCCTCCTGAAGCGCACCAATG
GCGGCGCTCTGGAACCTCAAGTCAGTTTTGAAATCCTGGGCGATCTCCCTCACCAACCTC
TGGAAGGGCAGCTTCCGGATCAGAAGCTCCGTGGACTTTTGGTAACGACGGATTTCTCGA
AGCGCGACGGTCCCGGGCCTGTAGCGATGAGGTTTTTTCACCCCGCCGGTAGAGGGAGCG
CTTTTCCTGGCAGCTTTAGTGGCCAGCTGTTTGCGGGGCGCTTTCCCACCCGTGGACTTA
CGAGCAGTCTGCTTGGTTCGGGCCATTTTCTTTTACCCAACAGCGAAGTCTGAGGCCGCT
TCCCCCACCGCCGTGCCGCTCCCGCCGCCCAATGAAGAGCCGCAGTCGCCGAACCAAAGC
AAGAAGCAACTCCAACGAACGACCAAACCGCTCTGC
|
|
gi|27370860|gb|AAH41218.1| |
Protein identifier
|
gi|27370860|gb|AAH41218.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
5' of NM_005324, - |
|
5' of NM_005324, - |
|
5' of NM_005324, - |
|
5' of NM_005324, - |
Human gene identifier and UTR site,
human gene reading direction
|
5' of NM_005324, - |
|
5' of NM_005324, - |
|
5' of NM_005324, - |
|
5' of NM_005324, - |
|
77-301, gnl|bosTau2|chr19 (49799871-49799656) |
|
77-301, gnl|Hg17|chr17 (71284187-71284439) |
| |
|
858-1715, gnl|bosTau2|chr19 (49798972-49798136) |
|
858-1715, gnl|Hg17|chr17 (71284927-71285804) |
| |
|
1038-1406, gnl|bosTau2|chr14 (9971724-9971357) |
|
1038-1406, gnl|Hg17|chr17 (71285135-71285500) |
|
1038-1406, gnl|Mm7|chr11 (116131336-116131685) |
| |
|
1719-2736, gnl|bosTau2|chr19 (51022757-51023775) |
|
1719-2736, gnl|Hg17|chr17 (71285790-71287451) |
|
1719-2736, gnl|Mm7|chr11 (116131993-116133544) |
| |
|
1725-2720, gnl|bosTau2|chr14 (9970776-9969783) |
|
1725-2720, gnl|Hg17|chr17 (71285795-71287418) |
|
1725-2720, gnl|Mm7|chr11 (116131998-116133509) |
| |
|
2195-2606, gnl|bosTau2|chr11 (1692348-1692759) |
|
2195-2606, gnl|Hg17|chr2 (175410554-175410143) |
|
2195-2606, gnl|Mm7|chr16 (91164089-91164500) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
77-301, gnl|bosTau2|chr19 (49799871-49799656) |
|
77-301, gnl|Hg17|chr17 (71284187-71284439) |
| |
|
858-1715, gnl|bosTau2|chr19 (49798972-49798136) |
|
858-1715, gnl|Hg17|chr17 (71284927-71285804) |
| |
|
1038-1406, gnl|bosTau2|chr14 (9971724-9971357) |
|
1038-1406, gnl|Hg17|chr17 (71285135-71285500) |
|
1038-1406, gnl|Mm7|chr11 (116131336-116131685) |
| |
|
1719-2736, gnl|bosTau2|chr19 (51022757-51023775) |
|
1719-2736, gnl|Hg17|chr17 (71285790-71287451) |
|
1719-2736, gnl|Mm7|chr11 (116131993-116133544) |
| |
|
1725-2720, gnl|bosTau2|chr14 (9970776-9969783) |
|
1725-2720, gnl|Hg17|chr17 (71285795-71287418) |
|
1725-2720, gnl|Mm7|chr11 (116131998-116133509) |
| |
|
2195-2606, gnl|bosTau2|chr11 (1692348-1692759) |
|
2195-2606, gnl|Hg17|chr2 (175410554-175410143) |
|
2195-2606, gnl|Mm7|chr16 (91164089-91164500) |
|
cmu (3.54147) |
|
ski (3.52164) |
|
tes (3.32502) |
|
mgp (3.22953) |
|
ova (3.09917) |
|
cte (2.9274) |
|
rec (2.76912) |
|
ret (2.57467) |
|
mga (2.56328) |
|
thg (2.53582) |
|
csk (2.39268) |
|
sin (2.27432) |
|
pgl (2.1327) |
|
eje (1.97668) |
|
aor (1.95274) |
|
elu (1.92678) |
|
fce (1.90114) |
|
spl (1.8614) |
|
ece (1.83444) |
|
spc (1.81385) |
|
fty (1.7584) |
|
liv (1.60913) |
|
eru (1.56062) |
|
pro (1.5361) |
|
lin (1.45603) |
|
gul (1.42071) |
|
sug (1.4002) |
|
med (1.39502) |
|
ese (1.39152) |
|
bla (1.36782) |
|
mcp (1.36519) |
|
cut (1.35939) |
|
eep (1.3482) |
|
nlu (1.34177) |
|
vin (1.33023) |
|
amn (1.25313) |
|
lyg (1.19792) |
|
cbe (1.19617) |
|
cje (1.15664) |
|
fco (1.10046) |
|
ebs (1.06471) |
|
cty (0.936719) |
|
ecc (0.920281) |
|
nep (0.919625) |
|
sme (0.91631) |
|
jej (0.890296) |
|
tra (0.861645) |
|
pty (0.856287) |
|
eye (0.852515) |
|
fhi (0.847889) |
|
nje (0.8296) |
|
nmm (0.796813) |
|
sag (0.730861) |
|
pan (0.707881) |
|
nca (0.684369) |
|
kid (0.648677) |
|
nco (0.646935) |
|
csp (0.644745) |
|
nms (0.641574) |
|
hea (0.613497) |
|
fat (0.58971) |
|
ldo (0.582016) |
|
cbl (0.573987) |
|
jca (0.569801) |
|
che (0.545256) |
|
ste (0.540833) |
|
ill (0.526778) |
|
cki (0.495704) |
|
tbr (0.462535) |
|
lnt (0.426925) |
|
cst (0.420109) |
|
ssp (0.406559) |
|
ute (0.398353) |
|
nbm (0.397298) |
|
fcc (0.39557) |
|
cly (0.361925) |
|
mgm (0.360685) |
|
clu (0.358938) |
|
ton (0.351) |
|
cli (0.305623) |
|
eli (0.303628) |
|
isp (0.300752) |
|
hlv (0.278513) |
|
mas (0.210305) |
|
fli (0.202881) |
|
col (0.195008) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
cag (0.151194) |
|
lun (0.150489) |
|
bfe (0.149858) |
|
pla (0.133672) |
|
cmu (3.54147) |
|
ski (3.52164) |
|
tes (3.32502) |
|
mgp (3.22953) |
|
ova (3.09917) |
|
cte (2.9274) |
|
rec (2.76912) |
|
ret (2.57467) |
|
mga (2.56328) |
|
thg (2.53582) |
|
csk (2.39268) |
|
sin (2.27432) |
|
pgl (2.1327) |
|
eje (1.97668) |
|
aor (1.95274) |
|
elu (1.92678) |
|
fce (1.90114) |
|
spl (1.8614) |
|
ece (1.83444) |
|
spc (1.81385) |
|
fty (1.7584) |
|
liv (1.60913) |
|
eru (1.56062) |
|
pro (1.5361) |
|
lin (1.45603) |
|
gul (1.42071) |
|
sug (1.4002) |
|
med (1.39502) |
|
ese (1.39152) |
|
bla (1.36782) |
|
mcp (1.36519) |
|
cut (1.35939) |
|
eep (1.3482) |
|
nlu (1.34177) |
|
vin (1.33023) |
|
amn (1.25313) |
|
lyg (1.19792) |
|
cbe (1.19617) |
|
cje (1.15664) |
|
fco (1.10046) |
|
ebs (1.06471) |
|
cty (0.936719) |
|
ecc (0.920281) |
|
nep (0.919625) |
|
sme (0.91631) |
|
jej (0.890296) |
|
tra (0.861645) |
|
pty (0.856287) |
|
eye (0.852515) |
|
fhi (0.847889) |
|
nje (0.8296) |
|
nmm (0.796813) |
|
sag (0.730861) |
|
pan (0.707881) |
|
nca (0.684369) |
|
kid (0.648677) |
|
nco (0.646935) |
|
csp (0.644745) |
|
nms (0.641574) |
|
hea (0.613497) |
|
fat (0.58971) |
|
ldo (0.582016) |
|
cbl (0.573987) |
|
jca (0.569801) |
|
che (0.545256) |
|
ste (0.540833) |
|
ill (0.526778) |
|
cki (0.495704) |
|
tbr (0.462535) |
|
lnt (0.426925) |
|
cst (0.420109) |
|
ssp (0.406559) |
|
ute (0.398353) |
|
nbm (0.397298) |
|
fcc (0.39557) |
|
cly (0.361925) |
|
mgm (0.360685) |
|
clu (0.358938) |
|
ton (0.351) |
|
cli (0.305623) |
|
eli (0.303628) |
|
isp (0.300752) |
|
hlv (0.278513) |
|
mas (0.210305) |
|
fli (0.202881) |
|
col (0.195008) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
cag (0.151194) |
|
lun (0.150489) |
|
bfe (0.149858) |
|
pla (0.133672) |
