Ss1.1-Lng1-LNG010017D03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTTTTTAGCGCCATCTGCTCACGGCGCCGCCTCCCGCCGCCGCCCTGAGTCACTGCCTG CGCAGCTCCGGCCGCCTGGCTCCCCGTGCTAGCCATCGAGACTTGGCATTCGTACAACAT GGCAGACATCGACAACAAAGAACAGTCTGAACTTGATCAAGATTTGGATGATGTTGAAGA AGTAGAAGAAGAAGAAACTGGTGAAGAAACAAAAATCAAAGCGCGTCAGCTGACTGTTCA GATGATGCAAAATCCTCAGATTCTTGCAGCCCTTCAAGAAAGACTTGATGGTCTGGTAGA AACACCAACAGGATACATTGAAAGCTTGCCTAGGGTAGTAAAAAGACGAGTGAATGCTCT CAAAAACCTTCAAGTTAAATGTGCACAGATAGAAGCCAAATTCTATGAGGAAGTTCATGA TCTTGAACGAAAATATGCTGTTCTCTATCAGCCTCTATTTGATAAGCGATTTGAGATCAT TAATGCCATTTATGAACCTACGGAAGAAGAATGTGAATGGAAACCAGATGAGGAAGATGA AATTTCGGAGGAGCTAAAAGAAAAGGCGAAGATTGAAGATGAGAAAAAAGATGAAGAAAA AGAAGACCCCAAGGGAATTCCTGAATTTTGGTTGACTGTTTTTAAGAATGTTGACTTGCT CAGTGATATGGTTCAGGAACATGATGAACCTATTCTGAAGCACTTGAAGGATATTAAAGT GAAATTCTCAGATGCTGGTCAGCCTATGAGTTTTGTCTTAGAATTTCACTTTGAACCCAA TGAATATTTCACAAACGAAGTGTTGACAAAGACATATAGGATGAGGTCAGAACCTGATGA TTCTGATCCCTTTTCTTTTGATGGACCAGAAATTATGGGTTGTACAGGGTGCCAGATAGA TTGGAAAAAAGGGAAGAATGTCACTTTGAAAACCATTAAGAAGAAGCAGAAACACAAGGG ACGCGGAACTGTTCGTACTGTGACCAAAACAGTTTCCAATGACTCTTTCTTTAATTTTTT TGCCCCTCCTGAAGTTCCTGAGAGTGGAGATCTGGATGATGATGCTGAAGCCATCCTTGC TGCAGACTTTGAAATTGGTCACTTTTTACGTGAGCGTATAATCCCTAGATCAGTGTTATA CTTTACCGGAGAAGCTATTGAAGATGATGATGATGATTATGATGAAGAAGGTGAAGAAGC GGATGAGGAAGGGGAAGAAGAAGGAGATGAGGAAAATGATCCAGACTATGACCCAAAGAA GGATCAAAACCCAGCAGAGTGCAAGCAGCAGTGAAGCAGGATGTATGTGGCCTTGAGGAT AAACCTGCACTGGTCTACCTTCTGCTTCCCTGGAAAGGATGAATTTACATCATTTGACAA GCCTATTTCAAGTTTTTTGTTTGTTTGTTTGCTTGTTTTTGTTTTTACAGCCTAAAATAA AAATGTCAAATATAATTTTAGTTCTCAGAAGATAATGTCTTAATTTTGTACTAATTCAGG TAGCACAGGCCTAGCTTGAATTAAGTTATGTACCCAGTTTGCCATATTATTGAAGAAAAA ATTACTAGATTATGAAAGAGGTACTACATCTACTAATGAAATGAAACAAAAAAAGAGAGA ATCTTAAATGATTCCTGAAGAACCATAAAAATTAAAAAGGTTAAATTTCATTTCCTTTGG TTATAACCATAGCTAGCCAGTGCCTTTCATTGCTTTGTTACAGAAATAGAGTGACTTATA CCAAGATAATTAATCATTTAAGAAACAAACCTTGTCAAAACAAGTATATGGTTAAGAATT TCCAGTAAGACCACACCTGATAACACATGTGTTAAGGCATATTAAGTTAAATTTTATGAA ATGTTTCTCAATTTCATTAAAAGCTCAAAAATTTGGACTTATTTTTACCACAAGTATGTG ATATTCAGCATTTTATTTATGCCAAGGTTTGATAATTAAACTGGAAAACAAAGGTTACAT ACCTTTATTCTGGATCTGCTCCAGCAACACTTGCAGATCTTTGTGTAGCTCCTATTTCAG TAGAAGTGGATTCATGAACAACAACTGTTTCACAGAAGTCCAAGGATTTTCTTTCCAGCT ATTTTAATTATGACCATATTAAATACTACAGACATTATGGGACTAAGACCATTTTTAGCA GAGGGAAATGCCATTAATTAGAGCTATAGAGCCACATTTAAAATACCTCAGGCTAATTAC TGTTACTTTTGGGGATGAACTTTTGACTGTGAGGGTGGACTAACAATTGTAGTTTTAGGA AGACCTAGAGTTCCTGCTCTTAATGAAATTACATTGGGTTAATTTTTAGAGGTATACAGC TTAAGGTCTTGGAATATAAAAGTATATAGTACTATCCATTTTTTTATTTGTATAGTACTA TCCATTCCTCTCCTGAGATTTTAACTTACTACTGGAAATCCTTAACCAATTGCAGTAGTT TGTAGGGAAAAAATGTCATGAGAATATCTCTTTTTCCTCTTTACTTTCAAAATGATTTTG GTTGTTTTGATTAGACATTCTTGCTGGTTTTTGTTTTTGTACCCATAGCTCATCTGAACA CAGCTTTTTATGAACTTAAAAATTTTAATCTAAAGATAGAATCCCATTTTTGATGAACTT TAAAAAAGTAGCAGAATCACTACTTTCCCCCCAACCCCATTCCTTTAGGAAATAGCTATT GCCAAAGTGAAGAGGTAGATATTGTTTCATCTTGTTGTAAAAGGGGGAATGGTTTGCAGA GGAGTCATTTCTTAATAAAGTTGGAGTTTCAAGGGATATCAGTGTTCATCTTTGCCATCT CTTTAGTTTCAAAATGGTTCTATTCCATTCTAAAAATCTGAACTGTGTAATTTGAAATCC TTAATAAAATTTGCATTTAATTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTTTTTAGCGCCATCTGCTCACGGCGCCGCCTCCCGCCGCCGCCCTGAGTCACTGCCTG CGCAGCTCCGGCCGCCTGGCTCCCCGTGCTAGCCATCGAGACTTGGCATTCGTACAACAT GGCAGACATCGACAACAAAGAACAGTCTGAACTTGATCAAGATTTGGATGATGTTGAAGA AGTAGAAGAAGAAGAAACTGGTGAAGAAACAAAAATCAAAGCGCGTCAGCTGACTGTTCA GATGATGCAAAATCCTCAGATTCTTGCAGCCCTTCAAGAAAGACTTGATGGTCTGGTAGA AACACCAACAGGATACATTGAAAGCTTGCCTAGGGTAGTAAAAAGACGAGTGAATGCTCT CAAAAACCTTCAAGTTAAATGTGCACAGATAGAAGCCAAATTCTATGAGGAAGTTCATGA TCTTGAACGAAAATATGCTGTTCTCTATCAGCCTCTATTTGATAAGCGATTTGAGATCAT TAATGCCATTTATGAACCTACGGAAGAAGAATGTGAATGGAAACCAGATGAGGAAGATGA AATTTCGGAGGAGCTAAAAGAAAAGGCGAAGATTGAAGATGAGAAAAAAGATGAAGAAAA AGAAGACCCCAAGGGAATTCCTGAATTTTGGTTGACTGTTTTTAAGAATGTTGACTTGCT CAGTGATATGGTTCAGGAACATGATGAACCTATTCTGAAGCACTTGAAGGATATTAAAGT GAAATTCTCAGATGCTGGTCAGCCTATGAGTTTTGTCTTAGAATTTCACTTTGAACCCAA TGAATATTTCACAAACGAAGTGTTGACAAAGACATATAGGATGAGGTCAGAACCTGATGA TTCTGATCCCTTTTCTTTTGATGGACCAGAAATTATGGGTTGTACAGGGTGCCAGATAGA TTGGAAAAAAGGGAAGAATGTCACTTTGAAAACCATTAAGAAGAAGCAGAAACACAAGGG ACGCGGAACTGTTCGTACTGTGACCAAAACAGTTTCCAATGACTCTTTCTTTAATTTTTT TGCCCCTCCTGAAGTTCCTGAGAGTGGAGATCTGGATGATGATGCTGAAGCCATCCTTGC TGCAGACTTTGAAATTGGTCACTTTTTACGTGAGCGTATAATCCCTAGATCAGTGTTATA CTTTACCGGAGAAGCTATTGAAGATGATGATGATGATTATGATGAAGAAGGTGAAGAAGC GGATGAGGAAGGGGAAGAAGAAGGAGATGAGGAAAATGATCCAGACTATGACCCAAAGAA GGATCAAAACCCAGCAGAGTGCAAGCAGCAGTGAAGCAGGATGTATGTGGCCTTGAGGAT AAACCTGCACTGGTCTACCTTCTGCTTCCCTGGAAAGGATGAATTTACATCATTTGACAA GCCTATTTCAAGTTTTTTGTTTGTTTGTTTGCTTGTTTTTGTTTTTACAGCCTAAAATAA AAATGTCAAATATAATTTTAGTTCTCAGAAGATAATGTCTTAATTTTGTACTAATTCAGG TAGCACAGGCCTAGCTTGAATTAAGTTATGTACCCAGTTTGCCATATTATTGAAGAAAAA ATTACTAGATTATGAAAGAGGTACTACATCTACTAATGAAATGAAACAAAAAAAGAGAGA ATCTTAAATGATTCCTGAAGAACCATAAAAATTAAAAAGGTTAAATTTCATTTCCTTTGG TTATAACCATAGCTAGCCAGTGCCTTTCATTGCTTTGTTACAGAAATAGAGTGACTTATA CCAAGATAATTAATCATTTAAGAAACAAACCTTGTCAAAACAAGTATATGGTTAAGAATT TCCAGTAAGACCACACCTGATAACACATGTGTTAAGGCATATTAAGTTAAATTTTATGAA ATGTTTCTCAATTTCATTAAAAGCTCAAAAATTTGGACTTATTTTTACCACAAGTATGTG ATATTCAGCATTTTATTTATGCCAAGGTTTGATAATTAAACTGGAAAACAAAGGTTACAT ACCTTTATTCTGGATCTGCTCCAGCAACACTTGCAGATCTTTGTGTAGCTCCTATTTCAG TAGAAGTGGATTCATGAACAACAACTGTTTCACAGAAGTCCAAGGATTTTCTTTCCAGCT ATTTTAATTATGACCATATTAAATACTACAGACATTATGGGACTAAGACCATTTTTAGCA GAGGGAAATGCCATTAATTAGAGCTATAGAGCCACATTTAAAATACCTCAGGCTAATTAC TGTTACTTTTGGGGATGAACTTTTGACTGTGAGGGTGGACTAACAATTGTAGTTTTAGGA AGACCTAGAGTTCCTGCTCTTAATGAAATTACATTGGGTTAATTTTTAGAGGTATACAGC TTAAGGTCTTGGAATATAAAAGTATATAGTACTATCCATTTTTTTATTTGTATAGTACTA TCCATTCCTCTCCTGAGATTTTAACTTACTACTGGAAATCCTTAACCAATTGCAGTAGTT TGTAGGGAAAAAATGTCATGAGAATATCTCTTTTTCCTCTTTACTTTCAAAATGATTTTG GTTGTTTTGATTAGACATTCTTGCTGGTTTTTGTTTTTGTACCCATAGCTCATCTGAACA CAGCTTTTTATGAACTTAAAAATTTTAATCTAAAGATAGAATCCCATTTTTGATGAACTT TAAAAAAGTAGCAGAATCACTACTTTCCCCCCAACCCCATTCCTTTAGGAAATAGCTATT GCCAAAGTGAAGAGGTAGATATTGTTTCATCTTGTTGTAAAAGGGGGAATGGTTTGCAGA GGAGTCATTTCTTAATAAAGTTGGAGTTTCAAGGGATATCAGTGTTCATCTTTGCCATCT CTTTAGTTTCAAAATGGTTCTATTCCATTCTAAAAATCTGAACTGTGTAATTTGAAATCC TTAATAAAATTTGCATTTAATTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 182-301, - strand, RNAz p=0.842947 | |
| 662-932, + strand, RNAz p=0.975032 | |
| 1212-1331, - strand, RNAz p=0.868167 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 182-301, - strand, RNAz p=0.842947 | |
| 662-932, + strand, RNAz p=0.975032 | |
| 1212-1331, - strand, RNAz p=0.868167 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 103-1475, gnl|bosTau2|chr13 (25592917-25591537) | |
| 103-1475, gnl|Hg17|chr13 (47235580-47236740) | |
| 103-1475, gnl|Mm7|chr1 (135121905-135123010) | |
| 1823-2666, gnl|bosTau2|chr5 (1977009-1976127) | |
| 1823-2666, gnl|Hg17|chr12 (74727268-74726440) | |
| 1823-2666, gnl|Mm7|chr10 (110959333-110960123) | |
| 2672-2904, gnl|bosTau2|chr5 (1976141-1975895) | |
| 2672-2904, gnl|canFam2|chr15 (22148598-22148956) | |
| 2672-2904, gnl|canFam2|chr15 (22148610-22148755) | |
| 2672-2904, gnl|canFam2|chr15 (22148606-22148952) | |
| 2672-2904, gnl|echTel1|scaffold_134592 (374-724) | |
| 2672-2904, gnl|echTel1|scaffold_320506 (49254-48931) | |
| 2672-2904, gnl|echTel1|scaffold_320506 (49255-49109) | |
| 2672-2904, gnl|hg17|chr1 (102587433-102587743) | |
| 2672-2904, gnl|hg17|chr12 (32767353-32767493) | |
| 2672-2904, gnl|Hg17|chr12 (74726462-74726227) | |
| 2672-2904, gnl|hg17|chrX (150587172-150587506) | |
| 2672-2904, gnl|loxAfr1|scaffold_7407 (86955-86614) | |
| 2672-2904, gnl|loxAfr1|scaffold_7407 (86954-86815) | |
| 2672-2904, gnl|loxAfr1|scaffold_7407 (86959-86617) | |
| 2672-2904, gnl|mm7|chr9 (5395868-5396187) | |
| 2672-2904, gnl|mm7|chrX (104491661-104491777) | |
| 2672-2904, gnl|mm7|chrX (104491657-104491946) | |
| 2672-2904, gnl|monDom2|scaffold_144 (980369-980462) | |
| 2672-2904, gnl|oryCun1|scaffold_186934 (4293-4640) | |
| 2672-2904, gnl|oryCun1|scaffold_186934 (4311-4453) | |
| 2672-2904, gnl|oryCun1|scaffold_186934 (4301-4634) | |
| 2672-2904, gnl|panTro1|chr1 (101780714-101781024) | |
| 2672-2904, gnl|panTro1|chrUn_random (34288074-34287934) | |
| 2672-2904, gnl|panTro1|chrX (155850397-155850732) | |
| 2672-2904, gnl|rheMac2|chr1 (105427578-105427895) | |
| 2672-2904, gnl|rheMac2|chr11 (32817392-32817532) | |
| 2672-2904, gnl|rheMac2|chrX (149825783-149826140) | |
| 2672-2904, gnl|rn3|chr7 (50551876-50551573) | |
| 2672-2904, gnl|rn3|chr7 (50551864-50551749) | |
| 2672-2904, gnl|rn3|chr7 (50551868-50551576) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 103-1475, gnl|bosTau2|chr13 (25592917-25591537) | |
| 103-1475, gnl|Hg17|chr13 (47235580-47236740) | |
| 103-1475, gnl|Mm7|chr1 (135121905-135123010) | |
| 1823-2666, gnl|bosTau2|chr5 (1977009-1976127) | |
| 1823-2666, gnl|Hg17|chr12 (74727268-74726440) | |
| 1823-2666, gnl|Mm7|chr10 (110959333-110960123) | |
| 2672-2904, gnl|bosTau2|chr5 (1976141-1975895) | |
| 2672-2904, gnl|canFam2|chr15 (22148598-22148956) | |
| 2672-2904, gnl|canFam2|chr15 (22148610-22148755) | |
| 2672-2904, gnl|canFam2|chr15 (22148606-22148952) | |
| 2672-2904, gnl|echTel1|scaffold_134592 (374-724) | |
| 2672-2904, gnl|echTel1|scaffold_320506 (49254-48931) | |
| 2672-2904, gnl|echTel1|scaffold_320506 (49255-49109) | |
| 2672-2904, gnl|hg17|chr1 (102587433-102587743) | |
| 2672-2904, gnl|hg17|chr12 (32767353-32767493) | |
| 2672-2904, gnl|Hg17|chr12 (74726462-74726227) | |
| 2672-2904, gnl|hg17|chrX (150587172-150587506) | |
| 2672-2904, gnl|loxAfr1|scaffold_7407 (86955-86614) | |
| 2672-2904, gnl|loxAfr1|scaffold_7407 (86954-86815) | |
| 2672-2904, gnl|loxAfr1|scaffold_7407 (86959-86617) | |
| 2672-2904, gnl|mm7|chr9 (5395868-5396187) | |
| 2672-2904, gnl|mm7|chrX (104491661-104491777) | |
| 2672-2904, gnl|mm7|chrX (104491657-104491946) | |
| 2672-2904, gnl|monDom2|scaffold_144 (980369-980462) | |
| 2672-2904, gnl|oryCun1|scaffold_186934 (4293-4640) | |
| 2672-2904, gnl|oryCun1|scaffold_186934 (4311-4453) | |
| 2672-2904, gnl|oryCun1|scaffold_186934 (4301-4634) | |
| 2672-2904, gnl|panTro1|chr1 (101780714-101781024) | |
| 2672-2904, gnl|panTro1|chrUn_random (34288074-34287934) | |
| 2672-2904, gnl|panTro1|chrX (155850397-155850732) | |
| 2672-2904, gnl|rheMac2|chr1 (105427578-105427895) | |
| 2672-2904, gnl|rheMac2|chr11 (32817392-32817532) | |
| 2672-2904, gnl|rheMac2|chrX (149825783-149826140) | |
| 2672-2904, gnl|rn3|chr7 (50551876-50551573) | |
| 2672-2904, gnl|rn3|chr7 (50551864-50551749) | |
| 2672-2904, gnl|rn3|chr7 (50551868-50551576) |
| Expressed library(ies): 70 entry(ies) | More info |
| Expressed library(ies): 70 entry(ies) | Help | Less info |
| thg (1.64828) | |
| cmu (1.49115) | |
| cte (1.4637) | |
| spl (1.43184) | |
| sug (1.14562) | |
| csk (1.12597) | |
| fat (1.03199) | |
| liv (1.02399) | |
| vin (0.997672) | |
| lyg (0.931718) | |
| gul (0.887942) | |
| spc (0.793561) | |
| aor (0.781097) | |
| tra (0.738552) | |
| sto (0.719295) | |
| ova (0.645661) | |
| ret (0.643666) | |
| hea (0.613497) | |
| ski (0.586941) | |
| lnt (0.569233) | |
| nco (0.485201) | |
| med (0.465008) | |
| tbr (0.462535) | |
| mgp (0.461361) | |
| isp (0.451128) | |
| amn (0.417711) | |
| ste (0.405625) | |
| elu (0.385356) | |
| sag (0.36543) | |
| mgm (0.360685) | |
| ton (0.351) | |
| eye (0.341006) | |
| cut (0.339847) | |
| mga (0.32041) | |
| cty (0.31224) | |
| sme (0.305437) | |
| bfe (0.299715) | |
| jej (0.296765) | |
| eje (0.296501) | |
| nca (0.273748) | |
| che (0.272628) | |
| fce (0.271592) | |
| bla (0.248694) | |
| pgl (0.236967) | |
| ecc (0.23007) | |
| cbl (0.229595) | |
| ece (0.229305) | |
| nms (0.213858) | |
| tes (0.207814) | |
| col (0.195008) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| rec (0.17307) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| fco (0.157208) | |
| lun (0.150489) | |
| lin (0.145603) | |
| pty (0.142714) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ese (0.126502) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| ldo (0.0970026) |
| Expressed library(ies): 70 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (1.64828) | |
| cmu (1.49115) | |
| cte (1.4637) | |
| spl (1.43184) | |
| sug (1.14562) | |
| csk (1.12597) | |
| fat (1.03199) | |
| liv (1.02399) | |
| vin (0.997672) | |
| lyg (0.931718) | |
| gul (0.887942) | |
| spc (0.793561) | |
| aor (0.781097) | |
| tra (0.738552) | |
| sto (0.719295) | |
| ova (0.645661) | |
| ret (0.643666) | |
| hea (0.613497) | |
| ski (0.586941) | |
| lnt (0.569233) | |
| nco (0.485201) | |
| med (0.465008) | |
| tbr (0.462535) | |
| mgp (0.461361) | |
| isp (0.451128) | |
| amn (0.417711) | |
| ste (0.405625) | |
| elu (0.385356) | |
| sag (0.36543) | |
| mgm (0.360685) | |
| ton (0.351) | |
| eye (0.341006) | |
| cut (0.339847) | |
| mga (0.32041) | |
| cty (0.31224) | |
| sme (0.305437) | |
| bfe (0.299715) | |
| jej (0.296765) | |
| eje (0.296501) | |
| nca (0.273748) | |
| che (0.272628) | |
| fce (0.271592) | |
| bla (0.248694) | |
| pgl (0.236967) | |
| ecc (0.23007) | |
| cbl (0.229595) | |
| ece (0.229305) | |
| nms (0.213858) | |
| tes (0.207814) | |
| col (0.195008) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| rec (0.17307) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| fco (0.157208) | |
| lun (0.150489) | |
| lin (0.145603) | |
| pty (0.142714) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ese (0.126502) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| ldo (0.0970026) |