Ss1.1-Lng1-LNG010036F09.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACCCACCCGGCTCTGCTCAGCTTCTCCCCAGACCCCGAGGCTGAGGATCATGGGGCCTG GAGCCCTCTTCCTGCTGCTGTCGGGGACCCTGGCCCTGACCGGGACCCAGGCGGGTCCCC ACTCCCTGAGCTATTTCTCCACCGCCGTGTCCCGGCCCGACCGCGGGGACTCCCGCTTCA TCGCCGTCGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCCCGAATC CGCGGATGGAGCCTCGGGTGCCGTGGATACAGCAGGAGGGGCAGGAGTATTGGGCTGAGG AGACGCGGAAAGTCAAGGACAACGCACAGACTTACCGAGTGAACCTGAAGACCCTGCGCG GCTACTACAACCAGAGCGTGGCCGGGTCTCACACCCTCCAGAGCATGTTTGGCTGCTACT TGGGACCAGACGGGCTCCTCCTCCACGGGTACAGACAGGACGCCTACGACGGCGCCGATT ACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACATGGCGGCTCAGATCA CCAAGCGCAAGTGGGAGGCGGCCGATGCGGCGGAGCAAATGAGAAGCTACCTGCAGGGAC TGTGTGTGGAGTCGCTCCGCAAATACCTGGAGATGGGGAAGGACACGCTGCAGCGCGCAG AGCCTCCAAAGACACATGTGACCCGCCACCCCAGCTCTGACCTCGGGGTCACCTTGAGGT GCTGGGCCCTGGGCTTCTACCCTAAGGAGATCTCCCTGACCTGGCAGCGGGAGGGCCAGG ACCAGAGCCAGGACATGGAGCTGGTGGAGACCAGGCCCTCAGGGGATGGGACCTTCCAGA AGTGGGCGGCCCTGGTGGTGCCTCCTGGAGAGGAGCAGAGCTACACCTGCCATGTGCAGC ACGAGGGCCTGCAGGAGCCACTCACCCTGAGATGGGACCCTGCTCAGCCCCCCGTCCCCA TCGTGGGCATCATTGTTGGCCTGGTTCTCGTCCTGGTCATTGGAGCCGTGGTGGCTGGAG TTGTGATCTGGAGGAAGAAGCGCTCAGGTGAAAAAGGAGGGAGCTACACTCAGGCTGCAG GCAGTGACAGTGACCAGGGCTCCGATGTGTCCCTTACCAAGGATCCTAGAGTGTGAGACA GCTGCCTTGTGGGGACTGAGGGACACAAGATTTGTTCACGTCCCACTTTGTGACTTCGGA TCCCCTGACTCCTGTTTCTGCAGCTGCCTCTGAAAGTGTCTGTGTTCCTATGCGCATCCT GAGAGGAGGTGGGGACCCTGGCCCAGTCCTGCCCCCCACGTCCCCTCCTCACCCTGACCT GTGTTCTCTTCCATGATCCTCTTTCCAGTTCCCCCAAGTGGGAGCCGGGCGGGGGTGGGG GGGGCGGCACTGGACCATCTCCATCCTTACTTAACTTGACTGCCCTGAGTAATGACTTTC TGTTGAATTTGCTTTTTCTAATTGGTGCCATGAGGAGTTGAGGGGATAATAAATGAGAGA TTTCCTATGTTTGAAAGAGGAAATAAATGGAAGGACTGAGAACCTTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACCCACCCGGCTCTGCTCAGCTTCTCCCCAGACCCCGAGGCTGAGGATCATGGGGCCTG GAGCCCTCTTCCTGCTGCTGTCGGGGACCCTGGCCCTGACCGGGACCCAGGCGGGTCCCC ACTCCCTGAGCTATTTCTCCACCGCCGTGTCCCGGCCCGACCGCGGGGACTCCCGCTTCA TCGCCGTCGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCCCGAATC CGCGGATGGAGCCTCGGGTGCCGTGGATACAGCAGGAGGGGCAGGAGTATTGGGCTGAGG AGACGCGGAAAGTCAAGGACAACGCACAGACTTACCGAGTGAACCTGAAGACCCTGCGCG GCTACTACAACCAGAGCGTGGCCGGGTCTCACACCCTCCAGAGCATGTTTGGCTGCTACT TGGGACCAGACGGGCTCCTCCTCCACGGGTACAGACAGGACGCCTACGACGGCGCCGATT ACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACATGGCGGCTCAGATCA CCAAGCGCAAGTGGGAGGCGGCCGATGCGGCGGAGCAAATGAGAAGCTACCTGCAGGGAC TGTGTGTGGAGTCGCTCCGCAAATACCTGGAGATGGGGAAGGACACGCTGCAGCGCGCAG AGCCTCCAAAGACACATGTGACCCGCCACCCCAGCTCTGACCTCGGGGTCACCTTGAGGT GCTGGGCCCTGGGCTTCTACCCTAAGGAGATCTCCCTGACCTGGCAGCGGGAGGGCCAGG ACCAGAGCCAGGACATGGAGCTGGTGGAGACCAGGCCCTCAGGGGATGGGACCTTCCAGA AGTGGGCGGCCCTGGTGGTGCCTCCTGGAGAGGAGCAGAGCTACACCTGCCATGTGCAGC ACGAGGGCCTGCAGGAGCCACTCACCCTGAGATGGGACCCTGCTCAGCCCCCCGTCCCCA TCGTGGGCATCATTGTTGGCCTGGTTCTCGTCCTGGTCATTGGAGCCGTGGTGGCTGGAG TTGTGATCTGGAGGAAGAAGCGCTCAGGTGAAAAAGGAGGGAGCTACACTCAGGCTGCAG GCAGTGACAGTGACCAGGGCTCCGATGTGTCCCTTACCAAGGATCCTAGAGTGTGAGACA GCTGCCTTGTGGGGACTGAGGGACACAAGATTTGTTCACGTCCCACTTTGTGACTTCGGA TCCCCTGACTCCTGTTTCTGCAGCTGCCTCTGAAAGTGTCTGTGTTCCTATGCGCATCCT GAGAGGAGGTGGGGACCCTGGCCCAGTCCTGCCCCCCACGTCCCCTCCTCACCCTGACCT GTGTTCTCTTCCATGATCCTCTTTCCAGTTCCCCCAAGTGGGAGCCGGGCGGGGGTGGGG GGGGCGGCACTGGACCATCTCCATCCTTACTTAACTTGACTGCCCTGAGTAATGACTTTC TGTTGAATTTGCTTTTTCTAATTGGTGCCATGAGGAGTTGAGGGGATAATAAATGAGAGA TTTCCTATGTTTGAAAGAGGAAATAAATGGAAGGACTGAGAACCTTCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 100-400, gnl|bosTau2|chr23 (23177867-23177569) | |
| 100-400, gnl|canFam2|chr12 (4024647-4024231) | |
| 100-400, gnl|dasNov1|scaffold_10933 (45706-46128) | |
| 100-400, gnl|echTel1|scaffold_220899 (10970-10534) | |
| 100-400, gnl|galGal2|chr16_random (559353-559743) | |
| 100-400, gnl|hg17|chr6 (29799374-29799799) | |
| 100-400, gnl|Hg17|chr6 (29868180-29868503) | |
| 100-400, gnl|loxAfr1|scaffold_35258 (7829-7403) | |
| 100-400, gnl|mm7|chr17 (33358692-33359086) | |
| 100-400, gnl|Mm7|chr17 (33358717-33359032) | |
| 100-400, gnl|monDom2|scaffold_42 (15573256-15573693) | |
| 100-400, gnl|oryCun1|scaffold_176700 (51383-51785) | |
| 100-400, gnl|panTro1|chr5 (30308424-30308849) | |
| 100-400, gnl|rheMac2|chr4 (29451676-29452107) | |
| 100-400, gnl|rn3|chr20 (5022277-5022669) | |
| 113-385, gnl|bosTau2|chr23 (23096967-23096696) | |
| 113-385, gnl|Hg17|chr6 (29903802-29904073) | |
| 113-385, gnl|Mm7|chr17 (34516576-34516305) | |
| 418-668, gnl|bosTau2|chr20 (36655627-36655873) | |
| 418-668, gnl|Hg17|chr6 (31347071-31346829) | |
| 418-668, gnl|Mm7|chr17 (32077846-32077606) | |
| 936-1063, gnl|bosTau2|chr23 (23047794-23047665) | |
| 936-1063, gnl|canFam2|chr12 (3938333-3938669) | |
| 936-1063, gnl|dasNov1|scaffold_10933 (27709-28037) | |
| 936-1063, gnl|echTel1|scaffold_220899 (9340-9001) | |
| 936-1063, gnl|galGal2|chr16_random (271111-271395) | |
| 936-1063, gnl|hg17|chr6 (30004005-30004367) | |
| 936-1063, gnl|Hg17|chr6 (30004212-30004350) | |
| 936-1063, gnl|loxAfr1|scaffold_35258 (6115-5789) | |
| 936-1063, gnl|mm7|chr17 (35139276-35138931) | |
| 936-1063, gnl|Mm7|chr17 (34472588-34472477) | |
| 936-1063, gnl|monDom2|scaffold_42 (15844035-15844404) | |
| 936-1063, gnl|oryCun1|scaffold_176700 (53005-53361) | |
| 936-1063, gnl|panTro1|chr5 (30480794-30481160) | |
| 936-1063, gnl|rheMac2|chr4 (30877587-30877274) | |
| 936-1063, gnl|rn3|chr20 (1647265-1647597) | |
| 1130-1548, gnl|bosTau2|chr23 (24592887-24593296) | |
| 1130-1548, gnl|Hg17|chr6 (30338262-30338704) | |
| 1130-1548, gnl|Mm7|chr17 (33574982-33575404) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 100-400, gnl|bosTau2|chr23 (23177867-23177569) | |
| 100-400, gnl|canFam2|chr12 (4024647-4024231) | |
| 100-400, gnl|dasNov1|scaffold_10933 (45706-46128) | |
| 100-400, gnl|echTel1|scaffold_220899 (10970-10534) | |
| 100-400, gnl|galGal2|chr16_random (559353-559743) | |
| 100-400, gnl|hg17|chr6 (29799374-29799799) | |
| 100-400, gnl|Hg17|chr6 (29868180-29868503) | |
| 100-400, gnl|loxAfr1|scaffold_35258 (7829-7403) | |
| 100-400, gnl|mm7|chr17 (33358692-33359086) | |
| 100-400, gnl|Mm7|chr17 (33358717-33359032) | |
| 100-400, gnl|monDom2|scaffold_42 (15573256-15573693) | |
| 100-400, gnl|oryCun1|scaffold_176700 (51383-51785) | |
| 100-400, gnl|panTro1|chr5 (30308424-30308849) | |
| 100-400, gnl|rheMac2|chr4 (29451676-29452107) | |
| 100-400, gnl|rn3|chr20 (5022277-5022669) | |
| 113-385, gnl|bosTau2|chr23 (23096967-23096696) | |
| 113-385, gnl|Hg17|chr6 (29903802-29904073) | |
| 113-385, gnl|Mm7|chr17 (34516576-34516305) | |
| 418-668, gnl|bosTau2|chr20 (36655627-36655873) | |
| 418-668, gnl|Hg17|chr6 (31347071-31346829) | |
| 418-668, gnl|Mm7|chr17 (32077846-32077606) | |
| 936-1063, gnl|bosTau2|chr23 (23047794-23047665) | |
| 936-1063, gnl|canFam2|chr12 (3938333-3938669) | |
| 936-1063, gnl|dasNov1|scaffold_10933 (27709-28037) | |
| 936-1063, gnl|echTel1|scaffold_220899 (9340-9001) | |
| 936-1063, gnl|galGal2|chr16_random (271111-271395) | |
| 936-1063, gnl|hg17|chr6 (30004005-30004367) | |
| 936-1063, gnl|Hg17|chr6 (30004212-30004350) | |
| 936-1063, gnl|loxAfr1|scaffold_35258 (6115-5789) | |
| 936-1063, gnl|mm7|chr17 (35139276-35138931) | |
| 936-1063, gnl|Mm7|chr17 (34472588-34472477) | |
| 936-1063, gnl|monDom2|scaffold_42 (15844035-15844404) | |
| 936-1063, gnl|oryCun1|scaffold_176700 (53005-53361) | |
| 936-1063, gnl|panTro1|chr5 (30480794-30481160) | |
| 936-1063, gnl|rheMac2|chr4 (30877587-30877274) | |
| 936-1063, gnl|rn3|chr20 (1647265-1647597) | |
| 1130-1548, gnl|bosTau2|chr23 (24592887-24593296) | |
| 1130-1548, gnl|Hg17|chr6 (30338262-30338704) | |
| 1130-1548, gnl|Mm7|chr17 (33574982-33575404) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| ill (3.16067) | |
| cag (2.11672) | |
| csp (2.09542) | |
| cli (1.98655) | |
| jej (0.791374) | |
| nlu (0.575043) | |
| nco (0.485201) | |
| clu (0.478583) | |
| cov (0.396458) | |
| cty (0.31224) | |
| jca (0.22792) | |
| nms (0.213858) | |
| ton (0.1755) | |
| sin (0.174948) | |
| fat (0.147427) | |
| eep (0.122564) | |
| pgl (0.118483) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (3.16067) | |
| cag (2.11672) | |
| csp (2.09542) | |
| cli (1.98655) | |
| jej (0.791374) | |
| nlu (0.575043) | |
| nco (0.485201) | |
| clu (0.478583) | |
| cov (0.396458) | |
| cty (0.31224) | |
| jca (0.22792) | |
| nms (0.213858) | |
| ton (0.1755) | |
| sin (0.174948) | |
| fat (0.147427) | |
| eep (0.122564) | |
| pgl (0.118483) |