Ss1.1-Lng1-LNG010047A03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCACTCCGCCAGCACAGGCCCCTCGCCCTTGCCGCTCCGCCTTCGCCGCCGGTCTACACC GCTACCAGTTCGCCATGGATGACGATATTGCTGCGCTCGTGGTCGACAACGGCTCCGGCA TGTGCAAGGCCGGCTTTGCGGGCGACGATGCTCCCCGGGCCGTCTTCCCCTCCATCGTGG GGCGCCCCCGACACCAGGGCGTGATGGTGGGCATGGGCCAGAAGGACTCCTACGTGGGGG ACGAGGCCCAGAGCAAGAGAGGCATCCTGACCCTCAAGTACCCCATCGAGCACGGCATCG TCACCAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTGCGTG TGGCCCCCGAGGAGCACCCCGTGCTGCTGACCGAGGCCCCCCTGAACCCCAAAGCCAACC GTGAGAAGATGACCCAGATCATGTTCGAGACCTTCAACACCCCAGCCATGTACGTGGCCA TCCAGGCCGTGCTGTCCCTGTACGCCTCTGGCCGCACCACTGGCATCGTGATGGACTCCG GAGACGGGGTCACCCACACGGTGCCCATCTACGAGGGGTACGCCCTGCCCCACGCCATCC TGCGTCTGGACCTGGCTGGCCGGGACCTGACCGACTACCTCATGAAGATCCTGACGGAGC GGGGCTACAGCTTCACCACCACGGCCGAGCGGGAGATCGTGCGGGACATCAAGGAGAAGC TGTGCTACGTCGCCCTGGACTTCGAGCAGGAGATGGCCACTGCCGCGTCCTCCTCCTCCC TGGAGAAGAGCTACGAGCTGCCCGACGGCCAGGTCATCACCATCGGCAACGAGCGCTTCC GCTGCCCCGAGGCGCTCTTCCAGCCCTCCTTCCTGGGCATGGAATCCTGCGGCATCCACG AAACTACCTTCAACTCCATCATGAAGTGCGACGTCGACATCCGCAAGGACCTCTACGCCA ACACGGTGCTGTCGGGTGGCACCACCATGTACCCAGGCATCGCCGACAGGATGCAGAAGG AGATCACGGCCCTGGCGCCCAGCACGATGAAGATCAAGATCATCGCGCCTCCAGAGCGCA AGTACTCCGTGTGGATCGGCGGCTCCATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGT GGATCAGCAAGCAGGAGTACGACGAGTCCGGCCCCTCCATCGTCCACCGCAAATGCTTCT AGGCGGACTGTTAGTTGCATTCCACCTTTTTCTTGACAAAACCTAACTTGCGCAGAAAAT GAGATGAGATTGGCATGGCTTTATTTGGTTTTGTTTTTTTGGTTTTTTTTTTTTTTTTTT TATTTTTTTTTTTTTTTTTTTTTGGTTTTTTTTTTTTGTTTTGTTTTGGCGCTTTTGACT CAGGATTTAAAAACTGGAACGGTGAAGGCGACCGCAGTTGGTTGGAGCAAACATCCCCCA AAGTTCTACAATTTCTTTTTTTTTTTTTTTTTTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCACTCCGCCAGCACAGGCCCCTCGCCCTTGCCGCTCCGCCTTCGCCGCCGGTCTACACC GCTACCAGTTCGCCATGGATGACGATATTGCTGCGCTCGTGGTCGACAACGGCTCCGGCA TGTGCAAGGCCGGCTTTGCGGGCGACGATGCTCCCCGGGCCGTCTTCCCCTCCATCGTGG GGCGCCCCCGACACCAGGGCGTGATGGTGGGCATGGGCCAGAAGGACTCCTACGTGGGGG ACGAGGCCCAGAGCAAGAGAGGCATCCTGACCCTCAAGTACCCCATCGAGCACGGCATCG TCACCAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTGCGTG TGGCCCCCGAGGAGCACCCCGTGCTGCTGACCGAGGCCCCCCTGAACCCCAAAGCCAACC GTGAGAAGATGACCCAGATCATGTTCGAGACCTTCAACACCCCAGCCATGTACGTGGCCA TCCAGGCCGTGCTGTCCCTGTACGCCTCTGGCCGCACCACTGGCATCGTGATGGACTCCG GAGACGGGGTCACCCACACGGTGCCCATCTACGAGGGGTACGCCCTGCCCCACGCCATCC TGCGTCTGGACCTGGCTGGCCGGGACCTGACCGACTACCTCATGAAGATCCTGACGGAGC GGGGCTACAGCTTCACCACCACGGCCGAGCGGGAGATCGTGCGGGACATCAAGGAGAAGC TGTGCTACGTCGCCCTGGACTTCGAGCAGGAGATGGCCACTGCCGCGTCCTCCTCCTCCC TGGAGAAGAGCTACGAGCTGCCCGACGGCCAGGTCATCACCATCGGCAACGAGCGCTTCC GCTGCCCCGAGGCGCTCTTCCAGCCCTCCTTCCTGGGCATGGAATCCTGCGGCATCCACG AAACTACCTTCAACTCCATCATGAAGTGCGACGTCGACATCCGCAAGGACCTCTACGCCA ACACGGTGCTGTCGGGTGGCACCACCATGTACCCAGGCATCGCCGACAGGATGCAGAAGG AGATCACGGCCCTGGCGCCCAGCACGATGAAGATCAAGATCATCGCGCCTCCAGAGCGCA AGTACTCCGTGTGGATCGGCGGCTCCATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGT GGATCAGCAAGCAGGAGTACGACGAGTCCGGCCCCTCCATCGTCCACCGCAAATGCTTCT AGGCGGACTGTTAGTTGCATTCCACCTTTTTCTTGACAAAACCTAACTTGCGCAGAAAAT GAGATGAGATTGGCATGGCTTTATTTGGTTTTGTTTTTTTGGTTTTTTTTTTTTTTTTTT TATTTTTTTTTTTTTTTTTTTTTGGTTTTTTTTTTTTGTTTTGTTTTGGCGCTTTTGACT CAGGATTTAAAAACTGGAACGGTGAAGGCGACCGCAGTTGGTTGGAGCAAACATCCCCCA AAGTTCTACAATTTCTTTTTTTTTTTTTTTTTTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 196-343, - strand, RNAz p=0.678984 | |
| 451-610, - strand, RNAz p=0.973364 | |
| 684-794, + strand, RNAz p=0.724337 | |
| 724-877, - strand, RNAz p=0.6633 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 196-343, - strand, RNAz p=0.678984 | |
| 451-610, - strand, RNAz p=0.973364 | |
| 684-794, + strand, RNAz p=0.724337 | |
| 724-877, - strand, RNAz p=0.6633 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 6-1328, gnl|bosTau2|chr1 (93219731-93218402) | |
| 6-1328, gnl|Hg17|chr7 (5342528-5340496) | |
| 6-1328, gnl|Mm7|chr5 (141938598-141936535) | |
| 196-523, gnl|bosTau2|chr10 (19086812-19086485) | |
| 196-523, gnl|canFam2|chr30 (5506751-5507104) | |
| 196-523, gnl|dasNov1|scaffold_19757 (44022-43669) | |
| 196-523, gnl|echTel1|scaffold_318944 (3386-3034) | |
| 196-523, gnl|fr1|chrUn (63305598-63305946) | |
| 196-523, gnl|galGal2|chr5 (29145784-29145442) | |
| 196-523, gnl|hg17|chr15 (32872717-32873069) | |
| 196-523, gnl|Hg17|chr15 (32873064-32872737) | |
| 196-523, gnl|loxAfr1|scaffold_10024 (29037-28725) | |
| 196-523, gnl|mm7|chr2 (113791108-113791460) | |
| 196-523, gnl|Mm7|chr2 (113791455-113791128) | |
| 196-523, gnl|monDom2|scaffold_12 (9572456-9572112) | |
| 196-523, gnl|oryCun1|scaffold_179293 (445-93) | |
| 196-523, gnl|panTro1|chr16 (32653340-32653692) | |
| 196-523, gnl|rheMac2|chr7 (13132136-13132488) | |
| 196-523, gnl|rn3|chr3 (99800397-99800748) | |
| 196-523, gnl|tetNig1|chr10 (7897220-7896871) | |
| 196-523, gnl|xenTro1|scaffold_199 (677786-677445) | |
| 684-877, gnl|bosTau2|chr10 (19085483-19085290) | |
| 684-877, gnl|canFam2|chr30 (5505628-5505833) | |
| 684-877, gnl|danRer3|chr14 (32886032-32885827) | |
| 684-877, gnl|dasNov1|scaffold_1043 (13637-13827) | |
| 684-877, gnl|echTel1|scaffold_318944 (4473-4268) | |
| 684-877, gnl|fr1|chrUn (63305079-63305280) | |
| 684-877, gnl|galGal2|chr5 (29146862-29146670) | |
| 684-877, gnl|hg17|chr15 (32871574-32871779) | |
| 684-877, gnl|Hg17|chr15 (32871775-32871582) | |
| 684-877, gnl|loxAfr1|scaffold_10024 (29791-29599) | |
| 684-877, gnl|mm7|chr2 (113790000-113790205) | |
| 684-877, gnl|Mm7|chr2 (113790201-113790008) | |
| 684-877, gnl|monDom2|scaffold_12 (9573880-9573675) | |
| 684-877, gnl|oryCun1|scaffold_214311 (43778-43970) | |
| 684-877, gnl|panTro1|chr16 (32652195-32652400) | |
| 684-877, gnl|rheMac2|chr7 (13130989-13131194) | |
| 684-877, gnl|rn3|chr3 (99799298-99799503) | |
| 684-877, gnl|tetNig1|chr10 (7897776-7897575) | |
| 684-877, gnl|xenTro1|scaffold_199 (679801-679596) | |
| 1057-1201, gnl|bosTau2|chr10 (19083781-19083637) | |
| 1057-1201, gnl|canFam2|chr30 (5503985-5504181) | |
| 1057-1201, gnl|danRer3|chr14 (32888947-32888749) | |
| 1057-1201, gnl|dasNov1|scaffold_19757 (46926-46730) | |
| 1057-1201, gnl|echTel1|scaffold_318944 (6298-6097) | |
| 1057-1201, gnl|fr1|chrUn (63304276-63304437) | |
| 1057-1201, gnl|galGal2|chr5 (29148742-29148542) | |
| 1057-1201, gnl|hg17|chr15 (32869867-32870064) | |
| 1057-1201, gnl|Hg17|chr15 (32870050-32869906) | |
| 1057-1201, gnl|loxAfr1|scaffold_10024 (30384-30190) | |
| 1057-1201, gnl|mm7|chr2 (113788269-113788465) | |
| 1057-1201, gnl|Mm7|chr2 (113788451-113788307) | |
| 1057-1201, gnl|monDom2|scaffold_12 (9576524-9576327) | |
| 1057-1201, gnl|oryCun1|scaffold_179293 (3266-3069) | |
| 1057-1201, gnl|panTro1|chr16 (32650491-32650688) | |
| 1057-1201, gnl|rheMac2|chr7 (13129319-13129512) | |
| 1057-1201, gnl|rn3|chr3 (99797588-99797772) | |
| 1057-1201, gnl|tetNig1|chr10 (7898617-7898430) | |
| 1057-1201, gnl|xenTro1|scaffold_199 (681082-680896) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-1328, gnl|bosTau2|chr1 (93219731-93218402) | |
| 6-1328, gnl|Hg17|chr7 (5342528-5340496) | |
| 6-1328, gnl|Mm7|chr5 (141938598-141936535) | |
| 196-523, gnl|bosTau2|chr10 (19086812-19086485) | |
| 196-523, gnl|canFam2|chr30 (5506751-5507104) | |
| 196-523, gnl|dasNov1|scaffold_19757 (44022-43669) | |
| 196-523, gnl|echTel1|scaffold_318944 (3386-3034) | |
| 196-523, gnl|fr1|chrUn (63305598-63305946) | |
| 196-523, gnl|galGal2|chr5 (29145784-29145442) | |
| 196-523, gnl|hg17|chr15 (32872717-32873069) | |
| 196-523, gnl|Hg17|chr15 (32873064-32872737) | |
| 196-523, gnl|loxAfr1|scaffold_10024 (29037-28725) | |
| 196-523, gnl|mm7|chr2 (113791108-113791460) | |
| 196-523, gnl|Mm7|chr2 (113791455-113791128) | |
| 196-523, gnl|monDom2|scaffold_12 (9572456-9572112) | |
| 196-523, gnl|oryCun1|scaffold_179293 (445-93) | |
| 196-523, gnl|panTro1|chr16 (32653340-32653692) | |
| 196-523, gnl|rheMac2|chr7 (13132136-13132488) | |
| 196-523, gnl|rn3|chr3 (99800397-99800748) | |
| 196-523, gnl|tetNig1|chr10 (7897220-7896871) | |
| 196-523, gnl|xenTro1|scaffold_199 (677786-677445) | |
| 684-877, gnl|bosTau2|chr10 (19085483-19085290) | |
| 684-877, gnl|canFam2|chr30 (5505628-5505833) | |
| 684-877, gnl|danRer3|chr14 (32886032-32885827) | |
| 684-877, gnl|dasNov1|scaffold_1043 (13637-13827) | |
| 684-877, gnl|echTel1|scaffold_318944 (4473-4268) | |
| 684-877, gnl|fr1|chrUn (63305079-63305280) | |
| 684-877, gnl|galGal2|chr5 (29146862-29146670) | |
| 684-877, gnl|hg17|chr15 (32871574-32871779) | |
| 684-877, gnl|Hg17|chr15 (32871775-32871582) | |
| 684-877, gnl|loxAfr1|scaffold_10024 (29791-29599) | |
| 684-877, gnl|mm7|chr2 (113790000-113790205) | |
| 684-877, gnl|Mm7|chr2 (113790201-113790008) | |
| 684-877, gnl|monDom2|scaffold_12 (9573880-9573675) | |
| 684-877, gnl|oryCun1|scaffold_214311 (43778-43970) | |
| 684-877, gnl|panTro1|chr16 (32652195-32652400) | |
| 684-877, gnl|rheMac2|chr7 (13130989-13131194) | |
| 684-877, gnl|rn3|chr3 (99799298-99799503) | |
| 684-877, gnl|tetNig1|chr10 (7897776-7897575) | |
| 684-877, gnl|xenTro1|scaffold_199 (679801-679596) | |
| 1057-1201, gnl|bosTau2|chr10 (19083781-19083637) | |
| 1057-1201, gnl|canFam2|chr30 (5503985-5504181) | |
| 1057-1201, gnl|danRer3|chr14 (32888947-32888749) | |
| 1057-1201, gnl|dasNov1|scaffold_19757 (46926-46730) | |
| 1057-1201, gnl|echTel1|scaffold_318944 (6298-6097) | |
| 1057-1201, gnl|fr1|chrUn (63304276-63304437) | |
| 1057-1201, gnl|galGal2|chr5 (29148742-29148542) | |
| 1057-1201, gnl|hg17|chr15 (32869867-32870064) | |
| 1057-1201, gnl|Hg17|chr15 (32870050-32869906) | |
| 1057-1201, gnl|loxAfr1|scaffold_10024 (30384-30190) | |
| 1057-1201, gnl|mm7|chr2 (113788269-113788465) | |
| 1057-1201, gnl|Mm7|chr2 (113788451-113788307) | |
| 1057-1201, gnl|monDom2|scaffold_12 (9576524-9576327) | |
| 1057-1201, gnl|oryCun1|scaffold_179293 (3266-3069) | |
| 1057-1201, gnl|panTro1|chr16 (32650491-32650688) | |
| 1057-1201, gnl|rheMac2|chr7 (13129319-13129512) | |
| 1057-1201, gnl|rn3|chr3 (99797588-99797772) | |
| 1057-1201, gnl|tetNig1|chr10 (7898617-7898430) | |
| 1057-1201, gnl|xenTro1|scaffold_199 (681082-680896) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| eep (0.857948) | |
| ece (0.687916) | |
| cov (0.660764) | |
| nco (0.646935) | |
| clu (0.598229) | |
| nlu (0.575043) | |
| cly (0.361925) | |
| eru (0.360144) | |
| med (0.348756) | |
| cki (0.330469) | |
| csp (0.322373) | |
| cty (0.31224) | |
| ese (0.253004) | |
| jca (0.22792) | |
| ill (0.175593) | |
| eye (0.170503) | |
| nje (0.16592) | |
| spl (0.143184) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ecc (0.115035) | |
| jej (0.0989218) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.857948) | |
| ece (0.687916) | |
| cov (0.660764) | |
| nco (0.646935) | |
| clu (0.598229) | |
| nlu (0.575043) | |
| cly (0.361925) | |
| eru (0.360144) | |
| med (0.348756) | |
| cki (0.330469) | |
| csp (0.322373) | |
| cty (0.31224) | |
| ese (0.253004) | |
| jca (0.22792) | |
| ill (0.175593) | |
| eye (0.170503) | |
| nje (0.16592) | |
| spl (0.143184) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ecc (0.115035) | |
| jej (0.0989218) |