Ss1.1-LyN1-MLN01D040093.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCCCAGCCCGCGAGCGGTTCTGACTCACCGTTTAACCTGAGGCCCTAGAGAACCAGAAA CCCAGAGGAACCGATACTCCTGGCACACAGAGCCCCATATTTAGTGACACTGTTTTGGAG TACCTGAATGATGACCAAGGTCCTGGGCATGGCCACGGTCCTGGGCCCGAGGCCGCCACA GGAACAGGGGCCCGTGATTGTGAAAGTCGAGGAGGAAGAGAAAGGGAAGCGCTTGGAGAT GTTCCGCCAGCGCTTCAGGCAGTTCGGGTACCATGACACACCTGGGCCCCGGGAGGCCCT CAGCCAGCTCCGGGTGCTCTGCTGTGAGTGGCTGAGGCCCGAGATCCACACCAAGGAGCA GATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCCCAGGAGCTCCAGGC CTGGGTGCAGGAGCACTGCCCAGAGAGTGCTGAAGAGGCCGTCACTCTCCTGGAAGATCT GGAGCGAGAACTGGATGAACCAGCACAGCAGGCCTCACCGCCTCCGCGTGAACAGAGCCA GTCGTGGGAGACGATGTCCTCAGGAACGACCAAGGAGTCCCTGAGCAGCCCGCAGCCCCA GGCTCTGGAGACCGGGCACCAGTACGAGTCTTGGGGGCCCCTCTACATCCAAGAGACTGG CGAGGAGCAGGGTTTCACGCCAGAGCTAAGAAAGATTCAAGATCATAAATCGAACACCCA GCATGAGGAAACAACAGATAAGCAGGAAGGTTCTAAAGAATCTCATGCAGAAGAATTCAG AAGGGATACTGTTCCCATGATTATTGCCAGTAAATGTGAGGCCAGGTTAGAAAGGCAGAG AGTAAACCTTGAAAAGGAAAGAGGAACAAAAACCCCTCTCCAAGGCAAAGGTTCCCCCAA ACGTAGGGAGTTAATTACTAAACCTGCCCCAGGAGAGAGACGTTACATATGTGCTGAGTG TGGGAAAGCCTTTAGTAATAGCTCCAATCTCACCAAACACCGGAGAACACACACTGGGGA GAAACCGTACGTGTGCACCAAGTGTGGGAAAGCTTTCAGCCACAGCTCAAACCTGACCCT TCACTACCGAACACACTTGGTGGACCGGCCCTACGACTGCAAGTGCGGAAAAGCCTTCGG TCAGAGCTCAGACCTCCTGAAACATCAGCGCATGCACACCGAAGAGGCCCCTTATCAGTG TAAAGATTGCGGAAAAGCCTTCAGCGGCAAAGGCAGCCTCATTCGACACTATCGAATACA CACTGGAGAGAAGCCGTATCAGTGTAACGAGTGTGGGAAGAGCTTTAGTCAGCATGCGGG TCTGAGCTCCCACCAGAGACTCCACACGGGAGAGAAGCCATATAAATGTACGGAGTGTGG GAAAGCCTTCAACCACAGCTCAAATTTTAATAAACACCACAGAATCCACACTGGGGAAAA GCCCTACTGGTGTAGTAATTGTGGGAAGACCTTCTGTAGTAAGTCCAACCTCTCCAAACA TCAGAGGGTCCACACGGCAGAGAGAGAAGGGCCTTAGCTGTCGAGTTGGCTCGCTTGGTG ATTTGGGGTTTTTTACCTTTAAAACATGAATGCGAGGGAGAAAACCTAGTAATTGGAATG GAAACTCTGGAGTAGATTTTGTTTCACTCAACATCACAGGGTGCCAAGGAGTGAGCTCAG GCGGGCACATGGTGGGCTCCTCGCCCGCCAGCCCTCGAGGGCAGGATCCCCTCACCACAT TTCATGTCCCGTAAACCCAGCCGGCATTGCCTCTTGTGTCATTCACCTGCTGTGTATCCA GTGTCATTAAGGAGGAAACATTAAAACCGTTTAGCTGTTTAACATGTATTCAAGAATTAC GATTTGTAAAGAATTGAACTACATTGAACACAGTTTAATCTGATTTGAAATAAATCTATA ACATCTCGTCAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCCCAGCCCGCGAGCGGTTCTGACTCACCGTTTAACCTGAGGCCCTAGAGAACCAGAAA CCCAGAGGAACCGATACTCCTGGCACACAGAGCCCCATATTTAGTGACACTGTTTTGGAG TACCTGAATGATGACCAAGGTCCTGGGCATGGCCACGGTCCTGGGCCCGAGGCCGCCACA GGAACAGGGGCCCGTGATTGTGAAAGTCGAGGAGGAAGAGAAAGGGAAGCGCTTGGAGAT GTTCCGCCAGCGCTTCAGGCAGTTCGGGTACCATGACACACCTGGGCCCCGGGAGGCCCT CAGCCAGCTCCGGGTGCTCTGCTGTGAGTGGCTGAGGCCCGAGATCCACACCAAGGAGCA GATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCCCAGGAGCTCCAGGC CTGGGTGCAGGAGCACTGCCCAGAGAGTGCTGAAGAGGCCGTCACTCTCCTGGAAGATCT GGAGCGAGAACTGGATGAACCAGCACAGCAGGCCTCACCGCCTCCGCGTGAACAGAGCCA GTCGTGGGAGACGATGTCCTCAGGAACGACCAAGGAGTCCCTGAGCAGCCCGCAGCCCCA GGCTCTGGAGACCGGGCACCAGTACGAGTCTTGGGGGCCCCTCTACATCCAAGAGACTGG CGAGGAGCAGGGTTTCACGCCAGAGCTAAGAAAGATTCAAGATCATAAATCGAACACCCA GCATGAGGAAACAACAGATAAGCAGGAAGGTTCTAAAGAATCTCATGCAGAAGAATTCAG AAGGGATACTGTTCCCATGATTATTGCCAGTAAATGTGAGGCCAGGTTAGAAAGGCAGAG AGTAAACCTTGAAAAGGAAAGAGGAACAAAAACCCCTCTCCAAGGCAAAGGTTCCCCCAA ACGTAGGGAGTTAATTACTAAACCTGCCCCAGGAGAGAGACGTTACATATGTGCTGAGTG TGGGAAAGCCTTTAGTAATAGCTCCAATCTCACCAAACACCGGAGAACACACACTGGGGA GAAACCGTACGTGTGCACCAAGTGTGGGAAAGCTTTCAGCCACAGCTCAAACCTGACCCT TCACTACCGAACACACTTGGTGGACCGGCCCTACGACTGCAAGTGCGGAAAAGCCTTCGG TCAGAGCTCAGACCTCCTGAAACATCAGCGCATGCACACCGAAGAGGCCCCTTATCAGTG TAAAGATTGCGGAAAAGCCTTCAGCGGCAAAGGCAGCCTCATTCGACACTATCGAATACA CACTGGAGAGAAGCCGTATCAGTGTAACGAGTGTGGGAAGAGCTTTAGTCAGCATGCGGG TCTGAGCTCCCACCAGAGACTCCACACGGGAGAGAAGCCATATAAATGTACGGAGTGTGG GAAAGCCTTCAACCACAGCTCAAATTTTAATAAACACCACAGAATCCACACTGGGGAAAA GCCCTACTGGTGTAGTAATTGTGGGAAGACCTTCTGTAGTAAGTCCAACCTCTCCAAACA TCAGAGGGTCCACACGGCAGAGAGAGAAGGGCCTTAGCTGTCGAGTTGGCTCGCTTGGTG ATTTGGGGTTTTTTACCTTTAAAACATGAATGCGAGGGAGAAAACCTAGTAATTGGAATG GAAACTCTGGAGTAGATTTTGTTTCACTCAACATCACAGGGTGCCAAGGAGTGAGCTCAG GCGGGCACATGGTGGGCTCCTCGCCCGCCAGCCCTCGAGGGCAGGATCCCCTCACCACAT TTCATGTCCCGTAAACCCAGCCGGCATTGCCTCTTGTGTCATTCACCTGCTGTGTATCCA GTGTCATTAAGGAGGAAACATTAAAACCGTTTAGCTGTTTAACATGTATTCAAGAATTAC GATTTGTAAAGAATTGAACTACATTGAACACAGTTTAATCTGATTTGAAATAAATCTATA ACATCTCGTCAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 315-512, + strand, RNAz p=0.989945 | |
| 1365-1484, - strand, RNAz p=0.945202 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 315-512, + strand, RNAz p=0.989945 | |
| 1365-1484, - strand, RNAz p=0.945202 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 31-512, gnl|bosTau2|chr25 (33142603-33143092) | |
| 31-512, gnl|Hg17|chr7 (99299185-99299680) | |
| 31-512, gnl|Mm7|chr5 (137070442-137071155) | |
| 231-484, gnl|bosTau2|chr15 (19143635-19143383) | |
| 231-484, gnl|canFam2|chr5 (13721301-13720956) | |
| 231-484, gnl|dasNov1|scaffold_93729 (5833-5513) | |
| 231-484, gnl|echTel1|scaffold_303413 (80665-81002) | |
| 231-484, gnl|hg17|chr11 (123106317-123106662) | |
| 231-484, gnl|Hg17|chr11 (123106684-123106432) | |
| 231-484, gnl|loxAfr1|scaffold_11701 (33363-33018) | |
| 231-484, gnl|mm7|chr9 (40137679-40137340) | |
| 231-484, gnl|Mm7|chr9 (40137316-40137568) | |
| 231-484, gnl|monDom2|scaffold_2 (112722771-112722438) | |
| 231-484, gnl|oryCun1|scaffold_143249 (14890-14545) | |
| 231-484, gnl|panTro1|chr9 (125147706-125148051) | |
| 231-484, gnl|rheMac2|chr14 (122093376-122093720) | |
| 231-484, gnl|rn3|chr8 (43167739-43167398) | |
| 231-484, gnl|xenTro1|scaffold_1098 (193190-192830) | |
| 236-424, gnl|bosTau2|chr13 (46206184-46206372) | |
| 236-424, gnl|canFam2|chr24 (27793270-27793767) | |
| 236-424, gnl|dasNov1|scaffold_2507 (103656-104125) | |
| 236-424, gnl|echTel1|scaffold_309798 (84835-85263) | |
| 236-424, gnl|hg17|chr20 (34005015-34005511) | |
| 236-424, gnl|Hg17|chr20 (34005308-34005120) | |
| 236-424, gnl|loxAfr1|scaffold_29083 (12644-13151) | |
| 236-424, gnl|mm7|chr2 (156052753-156053103) | |
| 236-424, gnl|Mm7|chr2 (156053005-156052817) | |
| 236-424, gnl|monDom2|scaffold_6 (11109423-11108930) | |
| 236-424, gnl|oryCun1|scaffold_143027 (25188-24754) | |
| 236-424, gnl|panTro1|chr21 (36225996-36226492) | |
| 236-424, gnl|rheMac2|chr10 (28569615-28569119) | |
| 236-424, gnl|rn3|chr3 (146616106-146616456) | |
| 907-1524, gnl|bosTau2|chr10 (8996959-8996338) | |
| 907-1524, gnl|Hg17|chr19 (42818687-42818059) | |
| 907-1524, gnl|Mm7|chr2 (127310384-127309769) | |
| 930-1523, gnl|bosTau2|chr10 (8996767-8996171) | |
| 930-1523, gnl|Hg17|chr19 (42818572-42817892) | |
| 930-1523, gnl|Mm7|chr2 (127310198-127309672) | |
| 932-1505, gnl|bosTau2|chr10 (8996597-8996021) | |
| 932-1505, gnl|Hg17|chr19 (42818402-42817755) | |
| 932-1505, gnl|Mm7|chr2 (127310028-127309536) | |
| 1692-1934, gnl|bosTau2|chr12 (9022801-9022558) | |
| 1692-1934, gnl|Hg17|chr7 (99307075-99307309) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 31-512, gnl|bosTau2|chr25 (33142603-33143092) | |
| 31-512, gnl|Hg17|chr7 (99299185-99299680) | |
| 31-512, gnl|Mm7|chr5 (137070442-137071155) | |
| 231-484, gnl|bosTau2|chr15 (19143635-19143383) | |
| 231-484, gnl|canFam2|chr5 (13721301-13720956) | |
| 231-484, gnl|dasNov1|scaffold_93729 (5833-5513) | |
| 231-484, gnl|echTel1|scaffold_303413 (80665-81002) | |
| 231-484, gnl|hg17|chr11 (123106317-123106662) | |
| 231-484, gnl|Hg17|chr11 (123106684-123106432) | |
| 231-484, gnl|loxAfr1|scaffold_11701 (33363-33018) | |
| 231-484, gnl|mm7|chr9 (40137679-40137340) | |
| 231-484, gnl|Mm7|chr9 (40137316-40137568) | |
| 231-484, gnl|monDom2|scaffold_2 (112722771-112722438) | |
| 231-484, gnl|oryCun1|scaffold_143249 (14890-14545) | |
| 231-484, gnl|panTro1|chr9 (125147706-125148051) | |
| 231-484, gnl|rheMac2|chr14 (122093376-122093720) | |
| 231-484, gnl|rn3|chr8 (43167739-43167398) | |
| 231-484, gnl|xenTro1|scaffold_1098 (193190-192830) | |
| 236-424, gnl|bosTau2|chr13 (46206184-46206372) | |
| 236-424, gnl|canFam2|chr24 (27793270-27793767) | |
| 236-424, gnl|dasNov1|scaffold_2507 (103656-104125) | |
| 236-424, gnl|echTel1|scaffold_309798 (84835-85263) | |
| 236-424, gnl|hg17|chr20 (34005015-34005511) | |
| 236-424, gnl|Hg17|chr20 (34005308-34005120) | |
| 236-424, gnl|loxAfr1|scaffold_29083 (12644-13151) | |
| 236-424, gnl|mm7|chr2 (156052753-156053103) | |
| 236-424, gnl|Mm7|chr2 (156053005-156052817) | |
| 236-424, gnl|monDom2|scaffold_6 (11109423-11108930) | |
| 236-424, gnl|oryCun1|scaffold_143027 (25188-24754) | |
| 236-424, gnl|panTro1|chr21 (36225996-36226492) | |
| 236-424, gnl|rheMac2|chr10 (28569615-28569119) | |
| 236-424, gnl|rn3|chr3 (146616106-146616456) | |
| 907-1524, gnl|bosTau2|chr10 (8996959-8996338) | |
| 907-1524, gnl|Hg17|chr19 (42818687-42818059) | |
| 907-1524, gnl|Mm7|chr2 (127310384-127309769) | |
| 930-1523, gnl|bosTau2|chr10 (8996767-8996171) | |
| 930-1523, gnl|Hg17|chr19 (42818572-42817892) | |
| 930-1523, gnl|Mm7|chr2 (127310198-127309672) | |
| 932-1505, gnl|bosTau2|chr10 (8996597-8996021) | |
| 932-1505, gnl|Hg17|chr19 (42818402-42817755) | |
| 932-1505, gnl|Mm7|chr2 (127310028-127309536) | |
| 1692-1934, gnl|bosTau2|chr12 (9022801-9022558) | |
| 1692-1934, gnl|Hg17|chr7 (99307075-99307309) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| elu (0.385356) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| nbm (0.0993246) | |
| eje (0.0988338) |