Non-Coding RNA Search

Ss1.1-Mixn-0030k23.5

Sequence:


               
               CAGAGACGTCGCTGCAGGTACACCGGCGCATCCACACAGGCGAGCGGCCGTACCCATGTC
CAGACTGTGGCAAGGCCTTCCGCCAGAGTACCCACCTGAAGGACCACCGGCGTCTGCACA
CCGGGGAGCGGCCATTTGCCTGTGAAGTGTGTGGCAAGGCCTTTGCCATCTCTATGCGCC
TGGCAGAACATCGCCGCATTCACACGGGCGAACGGCCCTACTCTTGTCCCGACTGTGGCA
AGAGCTACCGCTCCTTCTCCAACCTATGGAAGCACCGCAAGACCCACCAGCAGCAGCATC
AGGCAGCTGTGCGGCAGCAGCTGGCAGAGGCAGAGGCTGCTGTCGGCCTGGCTGTGATGG
AGACTGCAGTGGAGGCTCTGCCCCTAGTGGAGGCCATTGAGATCTACCCGCTGGCTGAGG
CTGAGGGGGTCCAGATCAGCGGCTGACCCTGCCCTGTTTCTCTCTTCAGCACCACTAGGT
CTGGTTGCTGAAGAACCTTCTCCAGCATCCCCTTAACTCCCTGTACATACTGTGCCCCTT
CTCCACCCCTCCCAACTGCCATATAAGTTCTGTAACTGGATTTATTCTCACTTCTGAGGG
GGGTGCTCCGGAGTCCTTGAAATGCATAAAGATGCCCCCCTCCCACCTGTTAGCACTGGT
GGCCCCAGGGTGAAAGAGTCAATAAAGACTGAGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGACGTCGCTGCAGGTACACCGGCGCATCCACACAGGCGAGCGGCCGTACCCATGTC
CAGACTGTGGCAAGGCCTTCCGCCAGAGTACCCACCTGAAGGACCACCGGCGTCTGCACA
CCGGGGAGCGGCCATTTGCCTGTGAAGTGTGTGGCAAGGCCTTTGCCATCTCTATGCGCC
TGGCAGAACATCGCCGCATTCACACGGGCGAACGGCCCTACTCTTGTCCCGACTGTGGCA
AGAGCTACCGCTCCTTCTCCAACCTATGGAAGCACCGCAAGACCCACCAGCAGCAGCATC
AGGCAGCTGTGCGGCAGCAGCTGGCAGAGGCAGAGGCTGCTGTCGGCCTGGCTGTGATGG
AGACTGCAGTGGAGGCTCTGCCCCTAGTGGAGGCCATTGAGATCTACCCGCTGGCTGAGG
CTGAGGGGGTCCAGATCAGCGGCTGACCCTGCCCTGTTTCTCTCTTCAGCACCACTAGGT
CTGGTTGCTGAAGAACCTTCTCCAGCATCCCCTTAACTCCCTGTACATACTGTGCCCCTT
CTCCACCCCTCCCAACTGCCATATAAGTTCTGTAACTGGATTTATTCTCACTTCTGAGGG
GGGTGCTCCGGAGTCCTTGAAATGCATAAAGATGCCCCCCTCCCACCTGTTAGCACTGGT
GGCCCCAGGGTGAAAGAGTCAATAAAGACTGAGTTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               122-241, - strand, RNAz p=0.680283
               

               
               362-559, - strand, RNAz p=0.743368

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               122-241, - strand, RNAz p=0.680283
               

               
               362-559, - strand, RNAz p=0.743368

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               40-227, - strand, RNAmicro p=0.997425
               

               
               284-372, + strand, RNAmicro p=0.970252

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               40-227, - strand, RNAmicro p=0.997425
               

               
               284-372, + strand, RNAmicro p=0.970252

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-696, gnl|bosTau2|chr18 (44818602-44819290)
               

               
               3-696, gnl|Hg17|chr19 (47276846-47277538)
               

               
               3-696, gnl|Mm7|chr7 (21871301-21871960)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-696, gnl|bosTau2|chr18 (44818602-44819290)
               

               
               3-696, gnl|Hg17|chr19 (47276846-47277538)
               

               
               3-696, gnl|Mm7|chr7 (21871301-21871960)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)

	122-241, - strand, RNAz p=0.680283
	362-559, - strand, RNAz p=0.743368

	40-227, - strand, RNAmicro p=0.997425
	284-372, + strand, RNAmicro p=0.970252

	3-696, gnl\|bosTau2\|chr18 (44818602-44819290)
	3-696, gnl\|Hg17\|chr19 (47276846-47277538)
	3-696, gnl\|Mm7\|chr7 (21871301-21871960)

	fcc (0.197785)
	fty (0.17584)
	ton (0.1755)
	eye (0.170503)
	fhi (0.169578)