Ss1.1-Pig4-TMW8020O16.5
|
ATTCCCACGTGTTCTCTTTCATCCAGCGGCTGCGGCGCCCGCCCTGACCCCGACCCTCCG
CCCCCAGACTCGACTGGCAGCGCAACCCCCCAGCCTCGTTCTGGTGTCGTGTGCGAGAGC
CTGTGCTCAAGTAAGAAATCGGGCCTCACTGGAAAAAACACTGAAGCAAAGGTTCGACAA
CTACTTTTCCAGAACAGAAAGGAAACTCATGCATCAGAAAAGGTGACTTATAAACGTACC
AAAAGAATATGGCTACACAAATACCAGAATCTGATCAGATAAAACAGTTTAAGGAATTTC
TTGGAACCTACAATAAACTTACAGAAACCTGCTTTTTGGACTGTGTTAAAGACTTCACAA
CAAGAGAAGTAAAACCTGAAGAGAACACCTGTTCAGAACATTGCTTACAGAAATATTTAA
AAATGACTCAGCGAATATCCATGAGATTTCAGGAATATCATATTCAGCAAAATGAAGCCC
TGGCTGCCAAAGCAGGACTCCTTGGTCAACCACGATAAAGAAGTCCTGATGGATGGACTT
TTGATGAAAAGTGACAAAAGCTGTTGCACTGGAAATGAGGATTCACCTGATAGAATCCCC
TGAAAGCAGCATCTACCATGTTAAGCCATCTGTCATAAACAGCAAATGGAAACCACTGGA
GAAACATAATTGCTATTTACCGGAAATAATCAAAATAGAAGGTCTTATTGTTCAGTAAAA
GTAGTGAGATACAACACTTGTTGAGGCCTTAAGATTCAGCAGCTTGGTCACTTGATTAGA
AAAAATAAACCATTGTTTCTTTGACGTGACTGTTAATTTTAAAGCAAAATATGTGTTCAA
TCATGTATGAGATAGAAAAAAATTTTTATTGCTAAAAGTGAAATAAATGGAAATATCACT
GAAAAAAAAAAAATATAGTACCATGGGTATTATGACTGGACTGTGGACACGAAGTGATTT
TCAATCAGGATCATCCTCCAAGCATTCCTGCTCATTCATATCTGCCTCAAATTGCTGGTA
AATACATAAAATAGTTACTTGCTAATCATTTCAATGCACAATCCTTTTCTTGGCTCCCTT |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATTCCCACGTGTTCTCTTTCATCCAGCGGCTGCGGCGCCCGCCCTGACCCCGACCCTCCG
CCCCCAGACTCGACTGGCAGCGCAACCCCCCAGCCTCGTTCTGGTGTCGTGTGCGAGAGC
CTGTGCTCAAGTAAGAAATCGGGCCTCACTGGAAAAAACACTGAAGCAAAGGTTCGACAA
CTACTTTTCCAGAACAGAAAGGAAACTCATGCATCAGAAAAGGTGACTTATAAACGTACC
AAAAGAATATGGCTACACAAATACCAGAATCTGATCAGATAAAACAGTTTAAGGAATTTC
TTGGAACCTACAATAAACTTACAGAAACCTGCTTTTTGGACTGTGTTAAAGACTTCACAA
CAAGAGAAGTAAAACCTGAAGAGAACACCTGTTCAGAACATTGCTTACAGAAATATTTAA
AAATGACTCAGCGAATATCCATGAGATTTCAGGAATATCATATTCAGCAAAATGAAGCCC
TGGCTGCCAAAGCAGGACTCCTTGGTCAACCACGATAAAGAAGTCCTGATGGATGGACTT
TTGATGAAAAGTGACAAAAGCTGTTGCACTGGAAATGAGGATTCACCTGATAGAATCCCC
TGAAAGCAGCATCTACCATGTTAAGCCATCTGTCATAAACAGCAAATGGAAACCACTGGA
GAAACATAATTGCTATTTACCGGAAATAATCAAAATAGAAGGTCTTATTGTTCAGTAAAA
GTAGTGAGATACAACACTTGTTGAGGCCTTAAGATTCAGCAGCTTGGTCACTTGATTAGA
AAAAATAAACCATTGTTTCTTTGACGTGACTGTTAATTTTAAAGCAAAATATGTGTTCAA
TCATGTATGAGATAGAAAAAAATTTTTATTGCTAAAAGTGAAATAAATGGAAATATCACT
GAAAAAAAAAAAATATAGTACCATGGGTATTATGACTGGACTGTGGACACGAAGTGATTT
TCAATCAGGATCATCCTCCAAGCATTCCTGCTCATTCATATCTGCCTCAAATTGCTGGTA
AATACATAAAATAGTTACTTGCTAATCATTTCAATGCACAATCCTTTTCTTGGCTCCCTT |
|
gi|33392766|gb|AAH54875.1| |
Protein identifier
|
gi|33392766|gb|AAH54875.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
1-133, gnl|bosTau2|chr10 (47959254-47959394) |
|
1-133, gnl|canFam2|chr8 (36801216-36802132) |
|
1-133, gnl|dasNov1|scaffold_23806 (9893-8980) |
|
1-133, gnl|echTel1|scaffold_288426 (1480-569) |
|
1-133, gnl|hg17|chr14 (57963403-57964284) |
|
1-133, gnl|Hg17|chr14 (57963655-57963522) |
|
1-133, gnl|loxAfr1|scaffold_18883 (53872-52979) |
|
1-133, gnl|mm7|chr12 (69080269-69081160) |
|
1-133, gnl|Mm7|chr12 (69080520-69080391) |
|
1-133, gnl|oryCun1|scaffold_87971 (3717-4620) |
|
1-133, gnl|panTro1|chr15 (57521619-57522505) |
|
1-133, gnl|rheMac2|chr7 (121428809-121429730) |
|
1-133, gnl|rn3|chr6 (93234545-93235430) |
| |
|
382-1080, gnl|bosTau2|chr10 (47973630-47974324) |
|
382-1080, gnl|Hg17|chr14 (57945641-57944937) |
|
382-1080, gnl|Mm7|chr12 (69067527-69066844) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-133, gnl|bosTau2|chr10 (47959254-47959394) |
|
1-133, gnl|canFam2|chr8 (36801216-36802132) |
|
1-133, gnl|dasNov1|scaffold_23806 (9893-8980) |
|
1-133, gnl|echTel1|scaffold_288426 (1480-569) |
|
1-133, gnl|hg17|chr14 (57963403-57964284) |
|
1-133, gnl|Hg17|chr14 (57963655-57963522) |
|
1-133, gnl|loxAfr1|scaffold_18883 (53872-52979) |
|
1-133, gnl|mm7|chr12 (69080269-69081160) |
|
1-133, gnl|Mm7|chr12 (69080520-69080391) |
|
1-133, gnl|oryCun1|scaffold_87971 (3717-4620) |
|
1-133, gnl|panTro1|chr15 (57521619-57522505) |
|
1-133, gnl|rheMac2|chr7 (121428809-121429730) |
|
1-133, gnl|rn3|chr6 (93234545-93235430) |
| |
|
382-1080, gnl|bosTau2|chr10 (47973630-47974324) |
|
382-1080, gnl|Hg17|chr14 (57945641-57944937) |
|
382-1080, gnl|Mm7|chr12 (69067527-69066844) |
|
mgp (0.922722) |
|
isp (0.601504) |
|
ret (0.3862) |
|
elu (0.385356) |
|
bfe (0.299715) |
|
fat (0.294855) |
|
lin (0.291206) |
|
lyg (0.266205) |
|
cbe (0.239234) |
|
pan (0.23596) |
|
mas (0.210305) |
|
aor (0.195274) |
|
sag (0.182715) |
|
gul (0.177588) |
|
fty (0.17584) |
|
sin (0.174948) |
|
fhi (0.169578) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
liv (0.146284) |
|
hyp (0.142837) |
|
csk (0.140746) |
|
cst (0.140036) |
|
nca (0.136874) |
|
ste (0.135208) |
|
bla (0.124347) |
|
tra (0.123092) |
|
pgl (0.118483) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
mgp (0.922722) |
|
isp (0.601504) |
|
ret (0.3862) |
|
elu (0.385356) |
|
bfe (0.299715) |
|
fat (0.294855) |
|
lin (0.291206) |
|
lyg (0.266205) |
|
cbe (0.239234) |
|
pan (0.23596) |
|
mas (0.210305) |
|
aor (0.195274) |
|
sag (0.182715) |
|
gul (0.177588) |
|
fty (0.17584) |
|
sin (0.174948) |
|
fhi (0.169578) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
liv (0.146284) |
|
hyp (0.142837) |
|
csk (0.140746) |
|
cst (0.140036) |
|
nca (0.136874) |
|
ste (0.135208) |
|
bla (0.124347) |
|
tra (0.123092) |
|
pgl (0.118483) |
|
jej (0.0989218) |
|
eje (0.0988338) |
