Non-Coding RNA Search

Ss1.1-Pig4-TMW8021O16.3

Sequence:


               
               ATGCACAGGAGTGGGTTTTTGTGATCATATGGTAGTTTTATATTTAGTTTTTTGCTTCAT
GTAGTGGCTGTA------------CCCACCAACAGTGTAGGCAGTTTCCTTCTTACCACA
TAACATCTCCAGCATTTAATGTTTATGGATTTCTTGGTGTGGGTGGTAAACCTCATTGTA
GTTTTGATTTTCATTTTTCTAATAATTACCAGTGTTGAGCATCTTTTCATGTGCCATCTG
TATCACCTTCGCAAAAATGTTTACTTAGGTCTTTTGGTCATTTTTTAATTGGGTTGGTCG
TTATTGAGTTGTATGAAATGAGTGTGTATTTTGGAAATTAAACCCTTGTAGCATCGTTAG
CAAATATTTTATTCCATTCTGCAGGTTGTCTTTTGGTTTATGGTTTTCTTCGCTATACAA
AAAGCAAGCTTGTTAGGTCCATTTGTTTGTTTTTGCTTCTATTTCTCTTGCCTTTGGAGA
CTGACCTAAAAACCAACCCACAATTTATGTCAGAGAATGTTTTGCCTATGTTTTTTCTAG
TTTTATGGTGTCATATTTTAAGTCTTTGAGCCATCTCAAGTTTTTGTGTGTGGCATGAAG
GTGTGTTCTAGCTTTTTTGATTTACATGCTGCTGTCCAGCTTTCCCAATACTACTTGAGA
TTATTTTCTATTATATATATAGTCTTGCCTCCTTTGTGGAAGATTGTATTGGCCATAGGT
GTGTGGTTTTATTGCTGGGCTCTCTATTCTGTTCCATTGACCTATATGTCTGTTTTTGTG
CCAGTACCATGCTGATTTGAGTACTGTATCTTTGTAGTATTGTCTGAGGTCTGGGAGAGT
TATGCCAAGGAGAGCTTTTCTAACATGAGCTTCAGTATGTTTCCATACATAATTATGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCACAGGAGTGGGTTTTTGTGATCATATGGTAGTTTTATATTTAGTTTTTTGCTTCAT
GTAGTGGCTGTA------------CCCACCAACAGTGTAGGCAGTTTCCTTCTTACCACA
TAACATCTCCAGCATTTAATGTTTATGGATTTCTTGGTGTGGGTGGTAAACCTCATTGTA
GTTTTGATTTTCATTTTTCTAATAATTACCAGTGTTGAGCATCTTTTCATGTGCCATCTG
TATCACCTTCGCAAAAATGTTTACTTAGGTCTTTTGGTCATTTTTTAATTGGGTTGGTCG
TTATTGAGTTGTATGAAATGAGTGTGTATTTTGGAAATTAAACCCTTGTAGCATCGTTAG
CAAATATTTTATTCCATTCTGCAGGTTGTCTTTTGGTTTATGGTTTTCTTCGCTATACAA
AAAGCAAGCTTGTTAGGTCCATTTGTTTGTTTTTGCTTCTATTTCTCTTGCCTTTGGAGA
CTGACCTAAAAACCAACCCACAATTTATGTCAGAGAATGTTTTGCCTATGTTTTTTCTAG
TTTTATGGTGTCATATTTTAAGTCTTTGAGCCATCTCAAGTTTTTGTGTGTGGCATGAAG
GTGTGTTCTAGCTTTTTTGATTTACATGCTGCTGTCCAGCTTTCCCAATACTACTTGAGA
TTATTTTCTATTATATATATAGTCTTGCCTCCTTTGTGGAAGATTGTATTGGCCATAGGT
GTGTGGTTTTATTGCTGGGCTCTCTATTCTGTTCCATTGACCTATATGTCTGTTTTTGTG
CCAGTACCATGCTGATTTGAGTACTGTATCTTTGTAGTATTGTCTGAGGTCTGGGAGAGT
TATGCCAAGGAGAGCTTTTCTAACATGAGCTTCAGTATGTTTCCATACATAATTATGTTT

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               6-773, gnl|bosTau2|chr1 (101787124-101787934)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-773, gnl|bosTau2|chr1 (101787124-101787934)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               mcp (0.170648)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               mcp (0.170648)