Ss1.1-Pig4-TMW8039H01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCAGTACGAGGAGATCGCCAACCGCAGCCGGGCCGAGGCCGAGGCCTGGTACCAGACCA AGTTTGAGACCCTCCAGGCCCAGGCTGGAAAGCACGGGGACGACCTCCGGAATACCCGGA ATGAGATTGCGGAGATGAACCGAGCCGTCCAGAGGCTGCAGGCGGAGATCGACAACATTA AGAACCAGCGTGCTAAGTTGGAGGCCGCCATCGCCGAAGCTGAGGACCGTGGGGAGCTGG CCCTCAAGGATGCTCGCGCCAAGCAGGAGGAGCTGGAGGCCGCCCTGCAGCGGGCCAAGC AGGACATGGCCAGGCAGCTGCGCGAGTACCAGGAGCTCATGAACGTCAAGCTGGCCCTGG ACATCGAGATCGCCACCTACCGCAAGCTGCTGGAGGGCGAGGAGAGCCGGCTGACTGGAG ATGGAGTGGGAGCCGTGAACATCTCTGTGGTGAACTCCACGGGTGGCGCTGGCAGCCGGC TGAGCTTCGGGGGAACCATGGGCAGCAACGCCCTGAGATTCTCCAGCGGTGGAGGGCCTG GGACCCTCAAGAGCTATTCCTTTAGGACCACATCTGCCACTGGCAGGAACACCCACAACT GAGCCCTGGGTGTGGGGAGACCTGTACCACTTGCCCCCATTGTCACAAGAGGACTCCCAT CCCTGGTCCCAAGACTGAGAAGCAGTCTGAAAAGTGATGTCAGAACAGCTTTCAATAAAG CAGCCCCTTTCTGAGGCCTGGGTGGGCCCCATGCCCAGCAAAAAAAAAAAAAAAAAAAGA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCAGTACGAGGAGATCGCCAACCGCAGCCGGGCCGAGGCCGAGGCCTGGTACCAGACCA AGTTTGAGACCCTCCAGGCCCAGGCTGGAAAGCACGGGGACGACCTCCGGAATACCCGGA ATGAGATTGCGGAGATGAACCGAGCCGTCCAGAGGCTGCAGGCGGAGATCGACAACATTA AGAACCAGCGTGCTAAGTTGGAGGCCGCCATCGCCGAAGCTGAGGACCGTGGGGAGCTGG CCCTCAAGGATGCTCGCGCCAAGCAGGAGGAGCTGGAGGCCGCCCTGCAGCGGGCCAAGC AGGACATGGCCAGGCAGCTGCGCGAGTACCAGGAGCTCATGAACGTCAAGCTGGCCCTGG ACATCGAGATCGCCACCTACCGCAAGCTGCTGGAGGGCGAGGAGAGCCGGCTGACTGGAG ATGGAGTGGGAGCCGTGAACATCTCTGTGGTGAACTCCACGGGTGGCGCTGGCAGCCGGC TGAGCTTCGGGGGAACCATGGGCAGCAACGCCCTGAGATTCTCCAGCGGTGGAGGGCCTG GGACCCTCAAGAGCTATTCCTTTAGGACCACATCTGCCACTGGCAGGAACACCCACAACT GAGCCCTGGGTGTGGGGAGACCTGTACCACTTGCCCCCATTGTCACAAGAGGACTCCCAT CCCTGGTCCCAAGACTGAGAAGCAGTCTGAAAAGTGATGTCAGAACAGCTTTCAATAAAG CAGCCCCTTTCTGAGGCCTGGGTGGGCCCCATGCCCAGCAAAAAAAAAAAAAAAAAAAGA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 199-410, + strand, RNAz p=0.949303 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 199-410, + strand, RNAz p=0.949303 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 195-432, gnl|bosTau2|chr5 (20057301-20057065) | |
| 195-432, gnl|Hg17|chr12 (51226551-51226314) | |
| 195-432, gnl|Mm7|chr15 (101722918-101722681) | |
| 199-424, gnl|bosTau2|chr5 (20298352-20298128) | |
| 199-424, gnl|Hg17|chr12 (51487905-51487682) | |
| 199-424, gnl|Mm7|chr15 (101905903-101905682) | |
| 297-410, gnl|bosTau2|chr13 (19902377-19902490) | |
| 297-410, gnl|canFam2|chr2 (22508665-22508523) | |
| 297-410, gnl|danRer3|chr24 (29509616-29509753) | |
| 297-410, gnl|dasNov1|scaffold_103823 (3528-3671) | |
| 297-410, gnl|echTel1|scaffold_89498 (2636-2779) | |
| 297-410, gnl|fr1|chrUn (164748044-164747901) | |
| 297-410, gnl|galGal2|chr2 (19101683-19101540) | |
| 297-410, gnl|hg17|chr10 (17317261-17317404) | |
| 297-410, gnl|Hg17|chr10 (17317282-17317395) | |
| 297-410, gnl|loxAfr1|scaffold_72049 (6912-7045) | |
| 297-410, gnl|mm7|chr2 (13519263-13519406) | |
| 297-410, gnl|Mm7|chr2 (13519284-13519397) | |
| 297-410, gnl|monDom2|scaffold_7 (52315440-52315297) | |
| 297-410, gnl|oryCun1|scaffold_178329 (51113-51256) | |
| 297-410, gnl|panTro1|chr8_random (14384825-14384682) | |
| 297-410, gnl|rheMac2|chr4 (137315649-137315787) | |
| 297-410, gnl|rn3|chr17 (87864013-87864156) | |
| 297-410, gnl|tetNig1|chrUn_random (16823858-16823721) | |
| 297-410, gnl|xenTro1|scaffold_553 (743873-744012) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 195-432, gnl|bosTau2|chr5 (20057301-20057065) | |
| 195-432, gnl|Hg17|chr12 (51226551-51226314) | |
| 195-432, gnl|Mm7|chr15 (101722918-101722681) | |
| 199-424, gnl|bosTau2|chr5 (20298352-20298128) | |
| 199-424, gnl|Hg17|chr12 (51487905-51487682) | |
| 199-424, gnl|Mm7|chr15 (101905903-101905682) | |
| 297-410, gnl|bosTau2|chr13 (19902377-19902490) | |
| 297-410, gnl|canFam2|chr2 (22508665-22508523) | |
| 297-410, gnl|danRer3|chr24 (29509616-29509753) | |
| 297-410, gnl|dasNov1|scaffold_103823 (3528-3671) | |
| 297-410, gnl|echTel1|scaffold_89498 (2636-2779) | |
| 297-410, gnl|fr1|chrUn (164748044-164747901) | |
| 297-410, gnl|galGal2|chr2 (19101683-19101540) | |
| 297-410, gnl|hg17|chr10 (17317261-17317404) | |
| 297-410, gnl|Hg17|chr10 (17317282-17317395) | |
| 297-410, gnl|loxAfr1|scaffold_72049 (6912-7045) | |
| 297-410, gnl|mm7|chr2 (13519263-13519406) | |
| 297-410, gnl|Mm7|chr2 (13519284-13519397) | |
| 297-410, gnl|monDom2|scaffold_7 (52315440-52315297) | |
| 297-410, gnl|oryCun1|scaffold_178329 (51113-51256) | |
| 297-410, gnl|panTro1|chr8_random (14384825-14384682) | |
| 297-410, gnl|rheMac2|chr4 (137315649-137315787) | |
| 297-410, gnl|rn3|chr17 (87864013-87864156) | |
| 297-410, gnl|tetNig1|chrUn_random (16823858-16823721) | |
| 297-410, gnl|xenTro1|scaffold_553 (743873-744012) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| amn (0.835422) | |
| pty (0.570858) | |
| ute (0.398353) | |
| nmm (0.265604) | |
| pla (0.133672) | |
| cov (0.132153) | |
| clu (0.119646) | |
| jca (0.11396) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.835422) | |
| pty (0.570858) | |
| ute (0.398353) | |
| nmm (0.265604) | |
| pla (0.133672) | |
| cov (0.132153) | |
| clu (0.119646) | |
| jca (0.11396) |