Ss1.1-Pig4-TMW8050B04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCGTGCTGTGTACTGTCTTCTCCGCGGGGAACGGGATTCATGTGACAAAACGTCTCTG TTCATGCTTGACTTGAAACTAGCCTCAAGCTTCACCTGTCCTCACTGATCTGTGGATTTC TGTATGACCAGAGCCCTGACTGAGTGCATTGTGGGGAGAAGAGGAGGAGTGTCCTGGCCC TTCCACTGCCCTGTTGTTCACTAAAACTTACCGTCGGAGTCACCACAGGATGGCAACCAT GGTTCTGTCCCCTACTTGTGCTCAGTCTTCCTTGTACCCAATCTCTCATCAAAAAGGATG CACAGAGGAGGAAGGGTTGGCCAATGGCTTCCTGACAAGCTGGTTACAAGACTTGGTGAC TTTTGAGGATGTGACAGTGGAGTTCACCCGGGAAGAGTGGGCACTGCTAGACCCTTCGCA ACGAACACTGTACAGAGATGTGACGCTGGAGAACTGCAGGAACCTGGCATCGCTTGGGTA TCATATTGATAAACCCAGTCTGATCTCCCAGTTGGAGCAAGAAGACAAGGTGATGACAGA GGAGAGAGGAGTTCTTCCAGGCAGCTGTCCAGATTTGGAGACTGTACTTAAAGCCAAATA CTTAACTCCTAAGAAGCATGTTTTTAGAAAAGAACATTCTAATGGTGTACAAGCGGAGAG AAGTCATCTTGGAGTGAAACTCAATGAATGTAATCAGTGTTTTAAAGTCTTCAGCACAAA ATCTAATCTTACTCAGCACAAAAGAATTCATACTGGAGAAAAACCCTATGACTGTAATCA ATGTGGCAAATCCTTCAGCAGTAGATCTTATCTTACTATTCATAAGAGAATACATAATGG GGAGAAACCCTATGAATGCAATGACTGTGGGAAAGCCTTCAACGATCCTTCATCCCTTAG ACTGCATGTAAGAATTCACACTGGAGAAAAACCCTATGAACATAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCGTGCTGTGTACTGTCTTCTCCGCGGGGAACGGGATTCATGTGACAAAACGTCTCTG TTCATGCTTGACTTGAAACTAGCCTCAAGCTTCACCTGTCCTCACTGATCTGTGGATTTC TGTATGACCAGAGCCCTGACTGAGTGCATTGTGGGGAGAAGAGGAGGAGTGTCCTGGCCC TTCCACTGCCCTGTTGTTCACTAAAACTTACCGTCGGAGTCACCACAGGATGGCAACCAT GGTTCTGTCCCCTACTTGTGCTCAGTCTTCCTTGTACCCAATCTCTCATCAAAAAGGATG CACAGAGGAGGAAGGGTTGGCCAATGGCTTCCTGACAAGCTGGTTACAAGACTTGGTGAC TTTTGAGGATGTGACAGTGGAGTTCACCCGGGAAGAGTGGGCACTGCTAGACCCTTCGCA ACGAACACTGTACAGAGATGTGACGCTGGAGAACTGCAGGAACCTGGCATCGCTTGGGTA TCATATTGATAAACCCAGTCTGATCTCCCAGTTGGAGCAAGAAGACAAGGTGATGACAGA GGAGAGAGGAGTTCTTCCAGGCAGCTGTCCAGATTTGGAGACTGTACTTAAAGCCAAATA CTTAACTCCTAAGAAGCATGTTTTTAGAAAAGAACATTCTAATGGTGTACAAGCGGAGAG AAGTCATCTTGGAGTGAAACTCAATGAATGTAATCAGTGTTTTAAAGTCTTCAGCACAAA ATCTAATCTTACTCAGCACAAAAGAATTCATACTGGAGAAAAACCCTATGACTGTAATCA ATGTGGCAAATCCTTCAGCAGTAGATCTTATCTTACTATTCATAAGAGAATACATAATGG GGAGAAACCCTATGAATGCAATGACTGTGGGAAAGCCTTCAACGATCCTTCATCCCTTAG ACTGCATGTAAGAATTCACACTGGAGAAAAACCCTATGAACATAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 226-645, gnl|bosTau2|chr17 (22472297-22472710) | |
| 226-645, gnl|Hg17|chr12 (132308858-132308445) | |
| 343-477, gnl|bosTau2|chr10 (9028008-9028142) | |
| 343-477, gnl|canFam2|chr13 (41173866-41173720) | |
| 343-477, gnl|canFam2|chr17 (38021163-38021010) | |
| 343-477, gnl|canFam2|chr5 (42207268-42207411) | |
| 343-477, gnl|dasNov1|scaffold_56625 (6765-6916) | |
| 343-477, gnl|dasNov1|scaffold_61491 (892-738) | |
| 343-477, gnl|dasNov1|scaffold_7623 (14333-14479) | |
| 343-477, gnl|echTel1|scaffold_293865 (37284-37176) | |
| 343-477, gnl|echTel1|scaffold_29775 (2075-1936) | |
| 343-477, gnl|echTel1|scaffold_312536 (80320-80163) | |
| 343-477, gnl|fr1|chrUn (307423493-307423637) | |
| 343-477, gnl|galGal2|chr2 (106181-106339) | |
| 343-477, gnl|galGal2|chrUn (148467078-148467228) | |
| 343-477, gnl|hg17|chr17 (15521610-15521755) | |
| 343-477, gnl|hg17|chr2 (95240744-95240898) | |
| 343-477, gnl|Hg17|chr2 (95240885-95240751) | |
| 343-477, gnl|hg17|chr8 (145962995-145963132) | |
| 343-477, gnl|loxAfr1|scaffold_13772 (22431-22286) | |
| 343-477, gnl|loxAfr1|scaffold_14553 (77423-77251) | |
| 343-477, gnl|loxAfr1|scaffold_22933 (32548-32409) | |
| 343-477, gnl|mm7|chr15 (76952962-76952805) | |
| 343-477, gnl|mm7|chr17 (19196527-19196390) | |
| 343-477, gnl|mm7|chr7 (37886131-37885976) | |
| 343-477, gnl|Mm7|chr8 (105017923-105018053) | |
| 343-477, gnl|monDom2|scaffold_1 (66465215-66465367) | |
| 343-477, gnl|monDom2|scaffold_38 (23189887-23190041) | |
| 343-477, gnl|oryCun1|scaffold_109597 (3663-3520) | |
| 343-477, gnl|oryCun1|scaffold_128204 (5511-5342) | |
| 343-477, gnl|oryCun1|scaffold_201253 (40291-40434) | |
| 343-477, gnl|panTro1|chr12 (98225290-98225444) | |
| 343-477, gnl|panTro1|chr19_random (22761710-22761565) | |
| 343-477, gnl|panTro1|chr7 (149223426-149223563) | |
| 343-477, gnl|rheMac2|chr13 (96244738-96244890) | |
| 343-477, gnl|rheMac2|chr16 (15392699-15392845) | |
| 343-477, gnl|rheMac2|chr8 (147411239-147411378) | |
| 343-477, gnl|rn3|chr1 (60066348-60066485) | |
| 343-477, gnl|rn3|chr19 (23240672-23240801) | |
| 343-477, gnl|rn3|chr7 (114959872-114959715) | |
| 343-477, gnl|xenTro1|scaffold_1044 (41369-41520) | |
| 343-477, gnl|xenTro1|scaffold_2065 (34948-34800) | |
| 343-477, gnl|xenTro1|scaffold_4246 (5246-5109) | |
| 646-946, gnl|bosTau2|chr14 (25783402-25783702) | |
| 646-946, gnl|Hg17|chr19 (49043259-49043559) | |
| 646-946, gnl|Mm7|chr7 (24898482-24898182) | |
| 647-945, gnl|bosTau2|chr14 (25784327-25784625) | |
| 647-945, gnl|Hg17|chr19 (49044184-49044482) | |
| 647-945, gnl|Mm7|chr7 (24897557-24897259) | |
| 656-940, gnl|bosTau2|chr13 (39984301-39984585) | |
| 656-940, gnl|Hg17|chr8 (185739-186023) | |
| 656-940, gnl|Mm7|chr7 (11121368-11121652) | |
| 657-939, gnl|bosTau2|chr10 (8996779-8996497) | |
| 657-939, gnl|Hg17|chr19 (42818584-42818302) | |
| 657-939, gnl|Mm7|chr2 (127310210-127309928) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 226-645, gnl|bosTau2|chr17 (22472297-22472710) | |
| 226-645, gnl|Hg17|chr12 (132308858-132308445) | |
| 343-477, gnl|bosTau2|chr10 (9028008-9028142) | |
| 343-477, gnl|canFam2|chr13 (41173866-41173720) | |
| 343-477, gnl|canFam2|chr17 (38021163-38021010) | |
| 343-477, gnl|canFam2|chr5 (42207268-42207411) | |
| 343-477, gnl|dasNov1|scaffold_56625 (6765-6916) | |
| 343-477, gnl|dasNov1|scaffold_61491 (892-738) | |
| 343-477, gnl|dasNov1|scaffold_7623 (14333-14479) | |
| 343-477, gnl|echTel1|scaffold_293865 (37284-37176) | |
| 343-477, gnl|echTel1|scaffold_29775 (2075-1936) | |
| 343-477, gnl|echTel1|scaffold_312536 (80320-80163) | |
| 343-477, gnl|fr1|chrUn (307423493-307423637) | |
| 343-477, gnl|galGal2|chr2 (106181-106339) | |
| 343-477, gnl|galGal2|chrUn (148467078-148467228) | |
| 343-477, gnl|hg17|chr17 (15521610-15521755) | |
| 343-477, gnl|hg17|chr2 (95240744-95240898) | |
| 343-477, gnl|Hg17|chr2 (95240885-95240751) | |
| 343-477, gnl|hg17|chr8 (145962995-145963132) | |
| 343-477, gnl|loxAfr1|scaffold_13772 (22431-22286) | |
| 343-477, gnl|loxAfr1|scaffold_14553 (77423-77251) | |
| 343-477, gnl|loxAfr1|scaffold_22933 (32548-32409) | |
| 343-477, gnl|mm7|chr15 (76952962-76952805) | |
| 343-477, gnl|mm7|chr17 (19196527-19196390) | |
| 343-477, gnl|mm7|chr7 (37886131-37885976) | |
| 343-477, gnl|Mm7|chr8 (105017923-105018053) | |
| 343-477, gnl|monDom2|scaffold_1 (66465215-66465367) | |
| 343-477, gnl|monDom2|scaffold_38 (23189887-23190041) | |
| 343-477, gnl|oryCun1|scaffold_109597 (3663-3520) | |
| 343-477, gnl|oryCun1|scaffold_128204 (5511-5342) | |
| 343-477, gnl|oryCun1|scaffold_201253 (40291-40434) | |
| 343-477, gnl|panTro1|chr12 (98225290-98225444) | |
| 343-477, gnl|panTro1|chr19_random (22761710-22761565) | |
| 343-477, gnl|panTro1|chr7 (149223426-149223563) | |
| 343-477, gnl|rheMac2|chr13 (96244738-96244890) | |
| 343-477, gnl|rheMac2|chr16 (15392699-15392845) | |
| 343-477, gnl|rheMac2|chr8 (147411239-147411378) | |
| 343-477, gnl|rn3|chr1 (60066348-60066485) | |
| 343-477, gnl|rn3|chr19 (23240672-23240801) | |
| 343-477, gnl|rn3|chr7 (114959872-114959715) | |
| 343-477, gnl|xenTro1|scaffold_1044 (41369-41520) | |
| 343-477, gnl|xenTro1|scaffold_2065 (34948-34800) | |
| 343-477, gnl|xenTro1|scaffold_4246 (5246-5109) | |
| 646-946, gnl|bosTau2|chr14 (25783402-25783702) | |
| 646-946, gnl|Hg17|chr19 (49043259-49043559) | |
| 646-946, gnl|Mm7|chr7 (24898482-24898182) | |
| 647-945, gnl|bosTau2|chr14 (25784327-25784625) | |
| 647-945, gnl|Hg17|chr19 (49044184-49044482) | |
| 647-945, gnl|Mm7|chr7 (24897557-24897259) | |
| 656-940, gnl|bosTau2|chr13 (39984301-39984585) | |
| 656-940, gnl|Hg17|chr8 (185739-186023) | |
| 656-940, gnl|Mm7|chr7 (11121368-11121652) | |
| 657-939, gnl|bosTau2|chr10 (8996779-8996497) | |
| 657-939, gnl|Hg17|chr19 (42818584-42818302) | |
| 657-939, gnl|Mm7|chr2 (127310210-127309928) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.115035) |