Ss1.1-Utr1-UTR010020F01.5.5
|
GGCTGGGAGAAATGGATGGCCAAGCCACCGCCAGCACCGCTCCAGTAGCGATGGCTCCCC
TCGTGGCCTTGGTCCTGCTCGGGCTGCTCTCACTGTCTGGCCTGGATGCGGTCGCGCGTC
CCCCGAAGGTTCAGGTTTACTCACGCCACCCAGCGGAAAACGGAAAGCCAAATTACCTGA
ACTGCTATGTATCTGGGTTCCATCCGCCCCAGATTGAAATTGATTTGCTGAAAAACGGGG
AGAAGATGAACGCGGAGCAGTCAGACCTGTCTTTCAGCAAGGACTGGTCTTTCTACCTTC
TGGTCCACACTGAGTTCACTCCTAACGCTGTGGATCAGTATAGCTGCCGCGTGAAGCACG
TGACTCTCGATAAGCCCAAGATAGTTAAGTGGGATCGAGACCACTAACCGGCATCACAGA
GATTATGAAGATGCTGCATCTGGGTTGGATGAATCCAAATTCTGATTTGTTGCTTTTTAA
TACTGATAAGCTTTTATACTTTATGCACATAAATCAGAAATCGTATTGATGTTACCACAA
ATGTTGTCTTCTTTGTAATTCTACCTTGGGTGTAGTCTCCATGTTTAAACTGTCTGAGCA
GGTAGATGTAGAGGGGGTGCCGGTAGCCTAGAGATGTGGAGGAAAGAATTTCAGGGTTAA
CATCAAACATCTTGGTCATGTATAAAGTCTTCAGTTTCAAATGCACATAAAACTAGATAA
TAAAACAGCAATCTAACTTTAGAGTAAACCTCCAGTTCGTCATTTTTCTCAGAATTTTGG
GAAATTTTTCAAAAGATAATGTCAGAATTATTGGAAATATGTTATAGAGTTGACATTTTG
TCATGTAAAATCATATTTACTTCTTACATCTTTTGATTGAGACATAGTTGTGCTTGTTTT
TATTTTGTTTGTCCAACTAAACTGATGGTAAAACTTGATTTTTAGTACTTAAATATCATA
TGCCTTCTAACACCTTTGTTCAAACAGGGAAATTGTCTTCCACTATCACTCGGACAAGAG
TGAAACTCCTCATGTATATGTTAGGTTTGGTTCACAGTTGAAGGTGTATCAGTGCCTGCA
TTTTACAAATGAAGAACTACATCTCCAAGAAGTTAAATGACTTAGGGGACACATATGTCT
GCTGGGAGACCTGGCTTCTGTCTTTTTATGAAAAAAATTATTGAAGTATTGTTGACTTAT
AACATTGTATTGATTTCTGCTGTATAAAAAAGTGACTCAGTTATGCACTCCTTTTCTTAC
TATTTTCCATAATGTTTTATCACAGGATAATGAATATAGTTCTCCGTGTTATACAGTAGC
ACCCTGTTGTTTATCCATACTATATATAATAGTTTCCTCTACTAATATCAAACTCCCAGT
CCTCTCCTCATCTGCCTTGACAACTGCAAATCTGTTATCTATATATCTCTGGGTCTGTTT
TTGTTTCATAGATATGTTGATTTGTGTTGTATTTTAGATTTCACATATAAATGATATCAT |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGCTGGGAGAAATGGATGGCCAAGCCACCGCCAGCACCGCTCCAGTAGCGATGGCTCCCC
TCGTGGCCTTGGTCCTGCTCGGGCTGCTCTCACTGTCTGGCCTGGATGCGGTCGCGCGTC
CCCCGAAGGTTCAGGTTTACTCACGCCACCCAGCGGAAAACGGAAAGCCAAATTACCTGA
ACTGCTATGTATCTGGGTTCCATCCGCCCCAGATTGAAATTGATTTGCTGAAAAACGGGG
AGAAGATGAACGCGGAGCAGTCAGACCTGTCTTTCAGCAAGGACTGGTCTTTCTACCTTC
TGGTCCACACTGAGTTCACTCCTAACGCTGTGGATCAGTATAGCTGCCGCGTGAAGCACG
TGACTCTCGATAAGCCCAAGATAGTTAAGTGGGATCGAGACCACTAACCGGCATCACAGA
GATTATGAAGATGCTGCATCTGGGTTGGATGAATCCAAATTCTGATTTGTTGCTTTTTAA
TACTGATAAGCTTTTATACTTTATGCACATAAATCAGAAATCGTATTGATGTTACCACAA
ATGTTGTCTTCTTTGTAATTCTACCTTGGGTGTAGTCTCCATGTTTAAACTGTCTGAGCA
GGTAGATGTAGAGGGGGTGCCGGTAGCCTAGAGATGTGGAGGAAAGAATTTCAGGGTTAA
CATCAAACATCTTGGTCATGTATAAAGTCTTCAGTTTCAAATGCACATAAAACTAGATAA
TAAAACAGCAATCTAACTTTAGAGTAAACCTCCAGTTCGTCATTTTTCTCAGAATTTTGG
GAAATTTTTCAAAAGATAATGTCAGAATTATTGGAAATATGTTATAGAGTTGACATTTTG
TCATGTAAAATCATATTTACTTCTTACATCTTTTGATTGAGACATAGTTGTGCTTGTTTT
TATTTTGTTTGTCCAACTAAACTGATGGTAAAACTTGATTTTTAGTACTTAAATATCATA
TGCCTTCTAACACCTTTGTTCAAACAGGGAAATTGTCTTCCACTATCACTCGGACAAGAG
TGAAACTCCTCATGTATATGTTAGGTTTGGTTCACAGTTGAAGGTGTATCAGTGCCTGCA
TTTTACAAATGAAGAACTACATCTCCAAGAAGTTAAATGACTTAGGGGACACATATGTCT
GCTGGGAGACCTGGCTTCTGTCTTTTTATGAAAAAAATTATTGAAGTATTGTTGACTTAT
AACATTGTATTGATTTCTGCTGTATAAAAAAGTGACTCAGTTATGCACTCCTTTTCTTAC
TATTTTCCATAATGTTTTATCACAGGATAATGAATATAGTTCTCCGTGTTATACAGTAGC
ACCCTGTTGTTTATCCATACTATATATAATAGTTTCCTCTACTAATATCAAACTCCCAGT
CCTCTCCTCATCTGCCTTGACAACTGCAAATCTGTTATCTATATATCTCTGGGTCTGTTT
TTGTTTCATAGATATGTTGATTTGTGTTGTATTTTAGATTTCACATATAAATGATATCAT |
|
118-393, gnl|bosTau2|chr10 (68992785-68992510) |
|
118-393, gnl|canFam2|chr30 (14327166-14327410) |
|
118-393, gnl|danRer3|chr13 (10739896-10740143) |
|
118-393, gnl|dasNov1|scaffold_39650 (12200-12449) |
|
118-393, gnl|echTel1|scaffold_285461 (43922-44172) |
|
118-393, gnl|fr1|chrUn (196871185-196871432) |
|
118-393, gnl|hg17|chr15 (42794912-42795159) |
|
118-393, gnl|Hg17|chr15 (42794913-42795191) |
|
118-393, gnl|loxAfr1|scaffold_61450 (11665-11454) |
|
118-393, gnl|mm7|chr2 (121891725-121891972) |
|
118-393, gnl|Mm7|chr2 (121891726-121892004) |
|
118-393, gnl|monDom2|scaffold_53 (9273754-9273507) |
|
118-393, gnl|oryCun1|scaffold_193344 (11355-11602) |
|
118-393, gnl|panTro1|chr16 (42707220-42707467) |
|
118-393, gnl|rheMac2|chr7 (23130413-23130660) |
|
118-393, gnl|rn3|chr3 (108836335-108836582) |
|
118-393, gnl|tetNig1|chrUn_random (118535816-118536064) |
| |
|
426-1166, gnl|bosTau2|chr10 (68990948-68990216) |
|
426-1166, gnl|Hg17|chr15 (42797100-42797870) |
| |
|
1178-1500, gnl|bosTau2|chr10 (37529101-37529432) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
118-393, gnl|bosTau2|chr10 (68992785-68992510) |
|
118-393, gnl|canFam2|chr30 (14327166-14327410) |
|
118-393, gnl|danRer3|chr13 (10739896-10740143) |
|
118-393, gnl|dasNov1|scaffold_39650 (12200-12449) |
|
118-393, gnl|echTel1|scaffold_285461 (43922-44172) |
|
118-393, gnl|fr1|chrUn (196871185-196871432) |
|
118-393, gnl|hg17|chr15 (42794912-42795159) |
|
118-393, gnl|Hg17|chr15 (42794913-42795191) |
|
118-393, gnl|loxAfr1|scaffold_61450 (11665-11454) |
|
118-393, gnl|mm7|chr2 (121891725-121891972) |
|
118-393, gnl|Mm7|chr2 (121891726-121892004) |
|
118-393, gnl|monDom2|scaffold_53 (9273754-9273507) |
|
118-393, gnl|oryCun1|scaffold_193344 (11355-11602) |
|
118-393, gnl|panTro1|chr16 (42707220-42707467) |
|
118-393, gnl|rheMac2|chr7 (23130413-23130660) |
|
118-393, gnl|rn3|chr3 (108836335-108836582) |
|
118-393, gnl|tetNig1|chrUn_random (118535816-118536064) |
| |
|
426-1166, gnl|bosTau2|chr10 (68990948-68990216) |
|
426-1166, gnl|Hg17|chr15 (42797100-42797870) |
| |
|
1178-1500, gnl|bosTau2|chr10 (37529101-37529432) |
|
jej (15.8275) |
|
sin (15.2204) |
|
rec (14.5379) |
|
cje (13.5492) |
|
cag (13.1539) |
|
csp (13.0561) |
|
cly (11.8229) |
|
ill (11.4135) |
|
tra (10.2166) |
|
liv (9.80105) |
|
lin (9.46418) |
|
duo (9.15846) |
|
col (8.19033) |
|
mga (8.17046) |
|
nje (7.79824) |
|
sto (7.01313) |
|
che (6.95202) |
|
spl (6.58648) |
|
lnt (6.26156) |
|
cli (6.11247) |
|
thg (5.70559) |
|
cov (5.68257) |
|
fat (5.45481) |
|
cga (5.02372) |
|
lun (4.96614) |
|
hea (4.90798) |
|
med (4.88259) |
|
csk (4.78536) |
|
cst (4.76124) |
|
cty (4.47544) |
|
cmu (4.47344) |
|
cbl (4.2475) |
|
aor (3.90549) |
|
nlu (3.83362) |
|
pgl (3.79147) |
|
jca (3.53276) |
|
cki (3.46993) |
|
ssp (3.25247) |
|
nmm (3.05445) |
|
gul (3.019) |
|
sme (2.74893) |
|
mgm (2.70514) |
|
ski (2.64123) |
|
ldo (2.61907) |
|
nco (2.58774) |
|
ret (2.57467) |
|
sug (2.54582) |
|
clu (2.51256) |
|
kid (2.46497) |
|
fty (2.46175) |
|
tbr (2.31267) |
|
spc (2.15395) |
|
isp (1.95489) |
|
bla (1.74086) |
|
cut (1.69924) |
|
ova (1.67872) |
|
ste (1.6225) |
|
mgp (1.61476) |
|
mcp (1.53584) |
|
sag (1.46172) |
|
ute (1.46063) |
|
hlv (1.39256) |
|
eje (1.28484) |
|
lyg (1.19792) |
|
bfe (1.049) |
|
pro (1.02407) |
|
cbe (0.956938) |
|
pty (0.856287) |
|
mas (0.84122) |
|
fce (0.814775) |
|
fli (0.811524) |
|
ton (0.702001) |
|
nca (0.684369) |
|
vin (0.665115) |
|
ese (0.632511) |
|
nep (0.551775) |
|
pan (0.471921) |
|
hyp (0.42851) |
|
nms (0.427716) |
|
amn (0.417711) |
|
nbm (0.397298) |
|
elu (0.385356) |
|
eep (0.367692) |
|
fbs (0.350693) |
|
cte (0.29274) |
|
cbr (0.255951) |
|
eru (0.240096) |
|
fcc (0.197785) |
|
eli (0.151814) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jej (15.8275) |
|
sin (15.2204) |
|
rec (14.5379) |
|
cje (13.5492) |
|
cag (13.1539) |
|
csp (13.0561) |
|
cly (11.8229) |
|
ill (11.4135) |
|
tra (10.2166) |
|
liv (9.80105) |
|
lin (9.46418) |
|
duo (9.15846) |
|
col (8.19033) |
|
mga (8.17046) |
|
nje (7.79824) |
|
sto (7.01313) |
|
che (6.95202) |
|
spl (6.58648) |
|
lnt (6.26156) |
|
cli (6.11247) |
|
thg (5.70559) |
|
cov (5.68257) |
|
fat (5.45481) |
|
cga (5.02372) |
|
lun (4.96614) |
|
hea (4.90798) |
|
med (4.88259) |
|
csk (4.78536) |
|
cst (4.76124) |
|
cty (4.47544) |
|
cmu (4.47344) |
|
cbl (4.2475) |
|
aor (3.90549) |
|
nlu (3.83362) |
|
pgl (3.79147) |
|
jca (3.53276) |
|
cki (3.46993) |
|
ssp (3.25247) |
|
nmm (3.05445) |
|
gul (3.019) |
|
sme (2.74893) |
|
mgm (2.70514) |
|
ski (2.64123) |
|
ldo (2.61907) |
|
nco (2.58774) |
|
ret (2.57467) |
|
sug (2.54582) |
|
clu (2.51256) |
|
kid (2.46497) |
|
fty (2.46175) |
|
tbr (2.31267) |
|
spc (2.15395) |
|
isp (1.95489) |
|
bla (1.74086) |
|
cut (1.69924) |
|
ova (1.67872) |
|
ste (1.6225) |
|
mgp (1.61476) |
|
mcp (1.53584) |
|
sag (1.46172) |
|
ute (1.46063) |
|
hlv (1.39256) |
|
eje (1.28484) |
|
lyg (1.19792) |
|
bfe (1.049) |
|
pro (1.02407) |
|
cbe (0.956938) |
|
pty (0.856287) |
|
mas (0.84122) |
|
fce (0.814775) |
|
fli (0.811524) |
|
ton (0.702001) |
|
nca (0.684369) |
|
vin (0.665115) |
|
ese (0.632511) |
|
nep (0.551775) |
|
pan (0.471921) |
|
hyp (0.42851) |
|
nms (0.427716) |
|
amn (0.417711) |
|
nbm (0.397298) |
|
elu (0.385356) |
|
eep (0.367692) |
|
fbs (0.350693) |
|
cte (0.29274) |
|
cbr (0.255951) |
|
eru (0.240096) |
|
fcc (0.197785) |
|
eli (0.151814) |
|
ebs (0.118301) |
|
ecc (0.115035) |
