Ss1.1-nep34c_n6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTGGCTTTGGCAGTGGTGGTTTTGGTGGAGGTGGTTTTGGTGGAGGTGGTTTTGGCAGA GGTGGTTTTGGCGGAGGTAGTTTTGGTGGAAATTTTGGGCCTGGATACCCTGGTGGCATA CACGAAGTCATCGTCAACCAGAGCCTTCTGCAACCTCTCAATGTGGAAGTCGACCCTGAG ATTCAAAAAATAAAGTCTCAAGAAAGGGAGCAAATCAAGTCCCTCAACAACCAATTCGCA TCCTTCATCGACAAGGTGAGGTTCCTGGAGCAGCAGAACCAGGTGCTGCAAACAAAATGG GAGCTGCTGCAGCAGATAAACACCACCACTAGGACCCAAAACTTAGAACCCTACTTTGAG GCCTACATCAGCAGTCTTAGAGCAAGAGTGGACCAACTGAAGAGCGAACAATCTCAGATG GATTCAGAACTGAAGAACGTGCAAGACCTGGTGGAGGATTATCGGAAAAAGTATGAGGAT GAGATCAACAAGCGGACCAATGCAGAGAATGAGTTTGTGAACATCAAGAAGGATGTGGAT GCAGCTTATATCACCAAGGTGAATCTTCAGGCTACAGTGGACAACTTGCGTCAGGAAGTT GAATTCCTCACTGCACTCTACCAAGCAGAGCTGGCTCAGATGCAGACTCATATCAGCGAA ACCAATGTCATCCTCTCCATGGACAACAACCGCCACCTGGACCTGAACAGCATCATCGAC GAAGTCAAAGCCCAATATGAAGAGATTGCCCAGAGGAGCAAGGCTGAGGCTGAGACCCTG TATCAGTCCAAGTATGAAGAGCTCCAGATCACTGCTGGCCAACATGGAGACAACTTGAAG AATTCAAAGATTGAGATTTCTGAGCTGAATCGGGTGATCCAAAGACTTAGATCTGATATC GACAATGTCAAGAAGCAGATCTCTGCAGTGCAGCAGTCTATCAGCGATGCAGAGCAGCGT GGTGAGAATGCCCTCAAAGATGCCCAGAACAAGCTGAATGAGCTGGAGGAGGCCCTGCAG AAGGCCAAGGAGGACCTGGCCCGCCTGCTGCGTGACTACCAGGAACTGATGAACACCAAA CTGGCCCTGGACGTGGAGATTGCCACCTATAGGACCCTCCTGGAAGGAGAAGAAAGCAGG ATGTCTGGAGAGTGTGCCCCGAACGTGAGTGTGTCTGTGAGCACCAGCCATACCAGTATC AGTGGAGGTAGTATCCGAGGAGGTGGTGGCTCTGGAGGCGGCAGCTACATCTCTGGAGGC GGCAGCAGCTACAGCTCTGGAGGTGGCGGCGGCAGTGGCAGCTATAGCTCCAGAGGCGGC GGTGGCAGCTACAGCTCCGGAGGAGGCGGCGGCGGCGGCGGCAGCAGTGGTGGCTATGGC TCCCGAGGCAGCAGTGGGGGCCATAGAGGAGGCTCTGGAAGCAGCTTCACGTCCTCTGGA GGCCGGGGATCCAGCTCTGGGGGCACCAAGACCTCTGGTGGCAGTTCCAGCATTAAGTTT GTTTCCACCAGCTATTCCCAAGGGGGGACCAGATAAAGAGATCCCCTCTCTCCCATTAGC TCTCCCTCTCCATCACTACCAAATATGCTTCTGATTGCCCCAGGCTTATTGGAGAAAAGA GCTCTGGTTAGTTACACTGGCCCATCCTTGTTCCCCAGCTCTTTCTTTTCTGCTCTGCTT CCCAAAGAAATTTTTAGGTCAGTGGCAATCTCAGTCTCCTATCTCTGACCCTGCTTTGTG CTTTGCCTGAGAAACAGTTCACCAATCATGGCCACACACATCACATTTCAAAGCACCTCC TTAAGTCAGCCAGAGGAGGGCTGGTCAGACCCACGGCTTCTTTGCCACGCATAGAGCATC AGCTATGGATAGCTTCTTATCCTAACCCTGACAACAAGCTCTGTGCTGCTTTGGTTTTGT ACATAAGGCATAAGCCAGTTGTCTTTTGTGGAGAGGTCTTCAACTCCCTGTTTCCTTGTG TTGCTGCAATAAACTGCATTTGAAACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTGGCTTTGGCAGTGGTGGTTTTGGTGGAGGTGGTTTTGGTGGAGGTGGTTTTGGCAGA GGTGGTTTTGGCGGAGGTAGTTTTGGTGGAAATTTTGGGCCTGGATACCCTGGTGGCATA CACGAAGTCATCGTCAACCAGAGCCTTCTGCAACCTCTCAATGTGGAAGTCGACCCTGAG ATTCAAAAAATAAAGTCTCAAGAAAGGGAGCAAATCAAGTCCCTCAACAACCAATTCGCA TCCTTCATCGACAAGGTGAGGTTCCTGGAGCAGCAGAACCAGGTGCTGCAAACAAAATGG GAGCTGCTGCAGCAGATAAACACCACCACTAGGACCCAAAACTTAGAACCCTACTTTGAG GCCTACATCAGCAGTCTTAGAGCAAGAGTGGACCAACTGAAGAGCGAACAATCTCAGATG GATTCAGAACTGAAGAACGTGCAAGACCTGGTGGAGGATTATCGGAAAAAGTATGAGGAT GAGATCAACAAGCGGACCAATGCAGAGAATGAGTTTGTGAACATCAAGAAGGATGTGGAT GCAGCTTATATCACCAAGGTGAATCTTCAGGCTACAGTGGACAACTTGCGTCAGGAAGTT GAATTCCTCACTGCACTCTACCAAGCAGAGCTGGCTCAGATGCAGACTCATATCAGCGAA ACCAATGTCATCCTCTCCATGGACAACAACCGCCACCTGGACCTGAACAGCATCATCGAC GAAGTCAAAGCCCAATATGAAGAGATTGCCCAGAGGAGCAAGGCTGAGGCTGAGACCCTG TATCAGTCCAAGTATGAAGAGCTCCAGATCACTGCTGGCCAACATGGAGACAACTTGAAG AATTCAAAGATTGAGATTTCTGAGCTGAATCGGGTGATCCAAAGACTTAGATCTGATATC GACAATGTCAAGAAGCAGATCTCTGCAGTGCAGCAGTCTATCAGCGATGCAGAGCAGCGT GGTGAGAATGCCCTCAAAGATGCCCAGAACAAGCTGAATGAGCTGGAGGAGGCCCTGCAG AAGGCCAAGGAGGACCTGGCCCGCCTGCTGCGTGACTACCAGGAACTGATGAACACCAAA CTGGCCCTGGACGTGGAGATTGCCACCTATAGGACCCTCCTGGAAGGAGAAGAAAGCAGG ATGTCTGGAGAGTGTGCCCCGAACGTGAGTGTGTCTGTGAGCACCAGCCATACCAGTATC AGTGGAGGTAGTATCCGAGGAGGTGGTGGCTCTGGAGGCGGCAGCTACATCTCTGGAGGC GGCAGCAGCTACAGCTCTGGAGGTGGCGGCGGCAGTGGCAGCTATAGCTCCAGAGGCGGC GGTGGCAGCTACAGCTCCGGAGGAGGCGGCGGCGGCGGCGGCAGCAGTGGTGGCTATGGC TCCCGAGGCAGCAGTGGGGGCCATAGAGGAGGCTCTGGAAGCAGCTTCACGTCCTCTGGA GGCCGGGGATCCAGCTCTGGGGGCACCAAGACCTCTGGTGGCAGTTCCAGCATTAAGTTT GTTTCCACCAGCTATTCCCAAGGGGGGACCAGATAAAGAGATCCCCTCTCTCCCATTAGC TCTCCCTCTCCATCACTACCAAATATGCTTCTGATTGCCCCAGGCTTATTGGAGAAAAGA GCTCTGGTTAGTTACACTGGCCCATCCTTGTTCCCCAGCTCTTTCTTTTCTGCTCTGCTT CCCAAAGAAATTTTTAGGTCAGTGGCAATCTCAGTCTCCTATCTCTGACCCTGCTTTGTG CTTTGCCTGAGAAACAGTTCACCAATCATGGCCACACACATCACATTTCAAAGCACCTCC TTAAGTCAGCCAGAGGAGGGCTGGTCAGACCCACGGCTTCTTTGCCACGCATAGAGCATC AGCTATGGATAGCTTCTTATCCTAACCCTGACAACAAGCTCTGTGCTGCTTTGGTTTTGT ACATAAGGCATAAGCCAGTTGTCTTTTGTGGAGAGGTCTTCAACTCCCTGTTTCCTTGTG TTGCTGCAATAAACTGCATTTGAAACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 254-1344, - strand, RNAz p=0.997175 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 254-1344, - strand, RNAz p=0.997175 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 254-473, gnl|bosTau2|chr5 (20193743-20193524) | |
| 254-473, gnl|canFam2|chr27 (5427598-5427346) | |
| 254-473, gnl|danRer3|chr6 (21647063-21646818) | |
| 254-473, gnl|dasNov1|scaffold_195883 (4341-4556) | |
| 254-473, gnl|echTel1|scaffold_312124 (41992-42244) | |
| 254-473, gnl|fr1|chrUn (207854886-207854656) | |
| 254-473, gnl|galGal2|chrUn (7761896-7761644) | |
| 254-473, gnl|hg17|chr12 (51358585-51358836) | |
| 254-473, gnl|Hg17|chr12 (51358809-51358590) | |
| 254-473, gnl|loxAfr1|scaffold_12667 (14184-13933) | |
| 254-473, gnl|mm7|chr15 (101835093-101835343) | |
| 254-473, gnl|Mm7|chr15 (101835317-101835098) | |
| 254-473, gnl|monDom2|scaffold_168 (458150-458392) | |
| 254-473, gnl|oryCun1|scaffold_176185 (70486-70736) | |
| 254-473, gnl|panTro1|chr10 (52583576-52583812) | |
| 254-473, gnl|rheMac2|chr11 (49750159-49750410) | |
| 254-473, gnl|rn3|chr7 (140620784-140621035) | |
| 254-473, gnl|tetNig1|chrUn_random (43152756-43152537) | |
| 254-473, gnl|xenTro1|scaffold_312 (1091681-1091933) | |
| 608-792, gnl|bosTau2|chr5 (20192543-20192355) | |
| 608-792, gnl|Hg17|chr12 (51357555-51357367) | |
| 608-792, gnl|Mm7|chr15 (101834104-101833914) | |
| 945-1151, gnl|bosTau2|chr5 (20298336-20298131) | |
| 945-1151, gnl|Hg17|chr12 (51487889-51487685) | |
| 945-1151, gnl|Mm7|chr15 (101905887-101905685) | |
| 946-1149, gnl|bosTau2|chr5 (20227342-20227139) | |
| 946-1149, gnl|canFam2|chr27 (5394317-5394084) | |
| 946-1149, gnl|danRer3|chr23 (6313524-6313739) | |
| 946-1149, gnl|dasNov1|scaffold_36707 (6370-6146) | |
| 946-1149, gnl|echTel1|scaffold_323098 (84848-84619) | |
| 946-1149, gnl|fr1|chrUn (81236700-81236912) | |
| 946-1149, gnl|galGal2|chrUn (45201691-45201467) | |
| 946-1149, gnl|hg17|chr12 (51395619-51395848) | |
| 946-1149, gnl|Hg17|chr12 (51395821-51395622) | |
| 946-1149, gnl|loxAfr1|scaffold_3302 (9090-9319) | |
| 946-1149, gnl|mm7|chr15 (101873451-101873675) | |
| 946-1149, gnl|Mm7|chr15 (101873648-101873450) | |
| 946-1149, gnl|monDom2|scaffold_168 (484763-484982) | |
| 946-1149, gnl|oryCun1|scaffold_205397 (41956-41722) | |
| 946-1149, gnl|panTro1|chr10 (52623960-52624189) | |
| 946-1149, gnl|rheMac2|chr11 (49786165-49786394) | |
| 946-1149, gnl|rn3|chr7 (140661145-140661374) | |
| 946-1149, gnl|tetNig1|chrUn_random (43167340-43167127) | |
| 946-1149, gnl|xenTro1|scaffold_312 (1101672-1101896) | |
| 1002-1140, gnl|bosTau2|chr19 (37398338-37398476) | |
| 1002-1140, gnl|Hg17|chr17 (40344267-40344129) | |
| 1002-1140, gnl|Mm7|chr11 (103002213-103002075) | |
| 1175-2005, gnl|bosTau2|chr5 (20190458-20189675) | |
| 1175-2005, gnl|Hg17|chr12 (51355668-51354790) | |
| 1175-2005, gnl|Mm7|chr15 (101832436-101831590) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 254-473, gnl|bosTau2|chr5 (20193743-20193524) | |
| 254-473, gnl|canFam2|chr27 (5427598-5427346) | |
| 254-473, gnl|danRer3|chr6 (21647063-21646818) | |
| 254-473, gnl|dasNov1|scaffold_195883 (4341-4556) | |
| 254-473, gnl|echTel1|scaffold_312124 (41992-42244) | |
| 254-473, gnl|fr1|chrUn (207854886-207854656) | |
| 254-473, gnl|galGal2|chrUn (7761896-7761644) | |
| 254-473, gnl|hg17|chr12 (51358585-51358836) | |
| 254-473, gnl|Hg17|chr12 (51358809-51358590) | |
| 254-473, gnl|loxAfr1|scaffold_12667 (14184-13933) | |
| 254-473, gnl|mm7|chr15 (101835093-101835343) | |
| 254-473, gnl|Mm7|chr15 (101835317-101835098) | |
| 254-473, gnl|monDom2|scaffold_168 (458150-458392) | |
| 254-473, gnl|oryCun1|scaffold_176185 (70486-70736) | |
| 254-473, gnl|panTro1|chr10 (52583576-52583812) | |
| 254-473, gnl|rheMac2|chr11 (49750159-49750410) | |
| 254-473, gnl|rn3|chr7 (140620784-140621035) | |
| 254-473, gnl|tetNig1|chrUn_random (43152756-43152537) | |
| 254-473, gnl|xenTro1|scaffold_312 (1091681-1091933) | |
| 608-792, gnl|bosTau2|chr5 (20192543-20192355) | |
| 608-792, gnl|Hg17|chr12 (51357555-51357367) | |
| 608-792, gnl|Mm7|chr15 (101834104-101833914) | |
| 945-1151, gnl|bosTau2|chr5 (20298336-20298131) | |
| 945-1151, gnl|Hg17|chr12 (51487889-51487685) | |
| 945-1151, gnl|Mm7|chr15 (101905887-101905685) | |
| 946-1149, gnl|bosTau2|chr5 (20227342-20227139) | |
| 946-1149, gnl|canFam2|chr27 (5394317-5394084) | |
| 946-1149, gnl|danRer3|chr23 (6313524-6313739) | |
| 946-1149, gnl|dasNov1|scaffold_36707 (6370-6146) | |
| 946-1149, gnl|echTel1|scaffold_323098 (84848-84619) | |
| 946-1149, gnl|fr1|chrUn (81236700-81236912) | |
| 946-1149, gnl|galGal2|chrUn (45201691-45201467) | |
| 946-1149, gnl|hg17|chr12 (51395619-51395848) | |
| 946-1149, gnl|Hg17|chr12 (51395821-51395622) | |
| 946-1149, gnl|loxAfr1|scaffold_3302 (9090-9319) | |
| 946-1149, gnl|mm7|chr15 (101873451-101873675) | |
| 946-1149, gnl|Mm7|chr15 (101873648-101873450) | |
| 946-1149, gnl|monDom2|scaffold_168 (484763-484982) | |
| 946-1149, gnl|oryCun1|scaffold_205397 (41956-41722) | |
| 946-1149, gnl|panTro1|chr10 (52623960-52624189) | |
| 946-1149, gnl|rheMac2|chr11 (49786165-49786394) | |
| 946-1149, gnl|rn3|chr7 (140661145-140661374) | |
| 946-1149, gnl|tetNig1|chrUn_random (43167340-43167127) | |
| 946-1149, gnl|xenTro1|scaffold_312 (1101672-1101896) | |
| 1002-1140, gnl|bosTau2|chr19 (37398338-37398476) | |
| 1002-1140, gnl|Hg17|chr17 (40344267-40344129) | |
| 1002-1140, gnl|Mm7|chr11 (103002213-103002075) | |
| 1175-2005, gnl|bosTau2|chr5 (20190458-20189675) | |
| 1175-2005, gnl|Hg17|chr12 (51355668-51354790) | |
| 1175-2005, gnl|Mm7|chr15 (101832436-101831590) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| nep (6.43737) | |
| eep (0.857948) | |
| eru (0.840336) | |
| csk (0.562984) | |
| eye (0.341006) | |
| ctl (0.153069) | |
| ski (0.146735) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (6.43737) | |
| eep (0.857948) | |
| eru (0.840336) | |
| csk (0.562984) | |
| eye (0.341006) | |
| ctl (0.153069) | |
| ski (0.146735) |