Non-Coding RNA Search

Ss1.1-recc2828c_l21.5

Sequence:


               
               TTGAATTAGTTCCTCGCCATGTCTTCTCACAAGACTTTCAGGATCAAGCGATTCTGGGCC
AAGAAGCAAAAGCAGAATCGTCCCATCCCCCAAGGGATTCGGATGAAAACTGGTAATAAA
ATCAGGTACAACTCGAAGAGAAGACATGGGAGAAGAACCAAGCTGGGTCTCTAAGGAGCC
TCCACGTGTGAGGTGGTGCACATATTGATGCTGTGTGGCAGTTATTTCCTTGCATTTTAC
CATATCACTGAAAACGGCACAGCCACCGTGGGATATATCTGGAAATGGGTTCTCTTTATG
TTGTTGTTTCTGTATAGCGCTTGGCCTCAGTAATAAACATGTGAAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAATTAGTTCCTCGCCATGTCTTCTCACAAGACTTTCAGGATCAAGCGATTCTGGGCC
AAGAAGCAAAAGCAGAATCGTCCCATCCCCCAAGGGATTCGGATGAAAACTGGTAATAAA
ATCAGGTACAACTCGAAGAGAAGACATGGGAGAAGAACCAAGCTGGGTCTCTAAGGAGCC
TCCACGTGTGAGGTGGTGCACATATTGATGCTGTGTGGCAGTTATTTCCTTGCATTTTAC
CATATCACTGAAAACGGCACAGCCACCGTGGGATATATCTGGAAATGGGTTCTCTTTATG
TTGTTGTTTCTGTATAGCGCTTGGCCTCAGTAATAAACATGTGAAGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13385552|ref|NP_080331.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13385552|ref|NP_080331.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               61-179, - strand, RNAz p=0.811496

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               61-179, - strand, RNAz p=0.811496

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-179, gnl|bosTau2|chr10 (52889334-52889512)
               

               
               1-179, gnl|Hg17|chr6 (74139725-74139548)
               

               
               1-179, gnl|Mm7|chr16 (9846296-9846474)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-179, gnl|bosTau2|chr10 (52889334-52889512)
               

               
               1-179, gnl|Hg17|chr6 (74139725-74139548)
               

               
               1-179, gnl|Mm7|chr16 (9846296-9846474)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               lnt (0.426925)
               

               
               ecc (0.345105)
               

               
               jca (0.34188)
               

               
               mcp (0.341297)
               

               
               cga (0.279096)
               

               
               cli (0.152812)
               

               
               nca (0.136874)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.426925)
               

               
               ecc (0.345105)
               

               
               jca (0.34188)
               

               
               mcp (0.341297)
               

               
               cga (0.279096)
               

               
               cli (0.152812)
               

               
               nca (0.136874)

	1-179, gnl\|bosTau2\|chr10 (52889334-52889512)
	1-179, gnl\|Hg17\|chr6 (74139725-74139548)
	1-179, gnl\|Mm7\|chr16 (9846296-9846474)

	lnt (0.426925)
	ecc (0.345105)
	jca (0.34188)
	mcp (0.341297)
	cga (0.279096)
	cli (0.152812)
	nca (0.136874)