Ss1.1-reep02c_e6.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCAGACGGCGCCCCCTGCCAGCTTCTCTCGTGCTGCTGAGAGCAGGCTGCCTGGCCAT GAGCACCACATTTCTGCAGACTTCTTCCTCTACCTTTGGGGGTGGCTCTACCCGGGGGGG TTCCCTCCTGGCTGGGGTAGGAGGCTTTGGTGGGGGGAGTCTCTACGGGGGAGGTGGGAG CCGCAGTATCTCAGTGTCTTCCGCGAGGTTTGTCTCCTCGGGGTCAGGAGGCGGCTTTGG TGGAGGGGCTGGTAGTGGTTTGGGTGGAGGCTTTGGAGGTGGCCTGGGAGGTGGTCTTGG GGGTGGCTTTGGAGGTGGCTTTGCTGGAAGCTTTGGTGGTGGCTTTGGTGACTTTGGAGG TGGCAATGGCGGCCTCCTTGCTGGCAACGAGAAGATCACCATGCAGAACCTCAACGACCG CCTGGCCTCCTACCTGGACAAGGTGCGAGCCCTGGAGGAGGCCAACGCCGACCTGGAGGT GAAGATCCATGACTGGTACCAGAAGCAGAGCCCCAGCAGCCCGGAGCGCGACTACAGCCC CTACTTCAAGACCATGGAGGAGCTCCGGGACAAGATCCGGGCGGCTGCCATCGATAACTC CCGGGTCATCCTGGAGATCGACAATGCCAGGCTGGCTGCGGACGACTTCAGACTCAAGTA TGAGAACGAGCTGGCGCTGCGCCAGGGCGTGGAGGCCGACATCAACGGCCTGCGCAGGGT GCTGGACGAGCTGACCTTGACCAAGACTGACCTGGAGATGCAGATTGAGAGCCTGAACGA GGAGCTGGCCTACCTGAAGAAGAACCATGAGGAGGAGATGAAGGAGTTCAGCAACCAGCT GGCAGGCCAGGTCAACGTGGAGATGGACGCGGCACCGGGCGTGGACCTGACCCGCGTGCT GGCAGAGATGAGGGAGCAGTATGAGGCCATAGCCGAGAAGAACCGCCGGGATGCCGAAGC CTGGTTTTTCAGCAAGACGGAGGAGCTGAATAAGGAGGTGGCCTCTAACACAGAGATGAT CCAGACCAGCAAGACAGAGATCACAGACCTGAGACGCACTGTACAGGGGCTGGAGATCGA GCTGCAATCCCAGCTCAGCATGAAAGCGGGGCTGGAGAGCTCGCTGGCCGAGACGGAGTG CCGCTATGCCACGCAGCTGCAGCAGATCCAGGGCCTCATCGGCGGCCTGGAGACCCAGCT GAGCGAGCTCCGCAGCGAGATGGAGTGCCAGAACCAGGAGTACAAGATGCTTCTGGACAT CAAGACGCGGCTGGAGCAGGAGATCGCCACCTACCGCAGCCTGCTGGAGGGCCAGGACGC CAGGATGGCCGGCATTGGCACCAGAGAAGCCTCCCTGGGAGGTGGCGGCGGCAAAGTCCG CATCAACGTCGAGGAGTCAGTGGATGGGAAGGTGGTTTCTTCCCGAAAGAGAGAAATCTA AACGCCCAGCGCAGGAGAGATGCCCCCCACCCTCCCCCGGCCGAGTGGACGGCTGGCTGG AGGGCCCGGAAGAGCTGACGCCAGGCCCTGCCTTCGGAGGGTCCAGCTCAAGGGGTCCCT CGTCTCCTAGTTGGGCGCTTTGCCTGCTGTCCCCCATCACCCCCTCCAGCTTTCTCGTCT CCTTTGGAGCAGGGAGGTGAAAGAAACAGCTGTTTTGTATAACGAGCTCATTCGTACCCT GTCTACCCATGCAATAAAGAATTGCTTTTCCTTTTGCAAATAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCAGACGGCGCCCCCTGCCAGCTTCTCTCGTGCTGCTGAGAGCAGGCTGCCTGGCCAT GAGCACCACATTTCTGCAGACTTCTTCCTCTACCTTTGGGGGTGGCTCTACCCGGGGGGG TTCCCTCCTGGCTGGGGTAGGAGGCTTTGGTGGGGGGAGTCTCTACGGGGGAGGTGGGAG CCGCAGTATCTCAGTGTCTTCCGCGAGGTTTGTCTCCTCGGGGTCAGGAGGCGGCTTTGG TGGAGGGGCTGGTAGTGGTTTGGGTGGAGGCTTTGGAGGTGGCCTGGGAGGTGGTCTTGG GGGTGGCTTTGGAGGTGGCTTTGCTGGAAGCTTTGGTGGTGGCTTTGGTGACTTTGGAGG TGGCAATGGCGGCCTCCTTGCTGGCAACGAGAAGATCACCATGCAGAACCTCAACGACCG CCTGGCCTCCTACCTGGACAAGGTGCGAGCCCTGGAGGAGGCCAACGCCGACCTGGAGGT GAAGATCCATGACTGGTACCAGAAGCAGAGCCCCAGCAGCCCGGAGCGCGACTACAGCCC CTACTTCAAGACCATGGAGGAGCTCCGGGACAAGATCCGGGCGGCTGCCATCGATAACTC CCGGGTCATCCTGGAGATCGACAATGCCAGGCTGGCTGCGGACGACTTCAGACTCAAGTA TGAGAACGAGCTGGCGCTGCGCCAGGGCGTGGAGGCCGACATCAACGGCCTGCGCAGGGT GCTGGACGAGCTGACCTTGACCAAGACTGACCTGGAGATGCAGATTGAGAGCCTGAACGA GGAGCTGGCCTACCTGAAGAAGAACCATGAGGAGGAGATGAAGGAGTTCAGCAACCAGCT GGCAGGCCAGGTCAACGTGGAGATGGACGCGGCACCGGGCGTGGACCTGACCCGCGTGCT GGCAGAGATGAGGGAGCAGTATGAGGCCATAGCCGAGAAGAACCGCCGGGATGCCGAAGC CTGGTTTTTCAGCAAGACGGAGGAGCTGAATAAGGAGGTGGCCTCTAACACAGAGATGAT CCAGACCAGCAAGACAGAGATCACAGACCTGAGACGCACTGTACAGGGGCTGGAGATCGA GCTGCAATCCCAGCTCAGCATGAAAGCGGGGCTGGAGAGCTCGCTGGCCGAGACGGAGTG CCGCTATGCCACGCAGCTGCAGCAGATCCAGGGCCTCATCGGCGGCCTGGAGACCCAGCT GAGCGAGCTCCGCAGCGAGATGGAGTGCCAGAACCAGGAGTACAAGATGCTTCTGGACAT CAAGACGCGGCTGGAGCAGGAGATCGCCACCTACCGCAGCCTGCTGGAGGGCCAGGACGC CAGGATGGCCGGCATTGGCACCAGAGAAGCCTCCCTGGGAGGTGGCGGCGGCAAAGTCCG CATCAACGTCGAGGAGTCAGTGGATGGGAAGGTGGTTTCTTCCCGAAAGAGAGAAATCTA AACGCCCAGCGCAGGAGAGATGCCCCCCACCCTCCCCCGGCCGAGTGGACGGCTGGCTGG AGGGCCCGGAAGAGCTGACGCCAGGCCCTGCCTTCGGAGGGTCCAGCTCAAGGGGTCCCT CGTCTCCTAGTTGGGCGCTTTGCCTGCTGTCCCCCATCACCCCCTCCAGCTTTCTCGTCT CCTTTGGAGCAGGGAGGTGAAAGAAACAGCTGTTTTGTATAACGAGCTCATTCGTACCCT GTCTACCCATGCAATAAAGAATTGCTTTTCCTTTTGCAAATAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 178-1550, - strand, RNAz p=0.93038 | |
| 1191-1310, + strand, RNAz p=0.741408 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 178-1550, - strand, RNAz p=0.93038 | |
| 1191-1310, + strand, RNAz p=0.741408 |
| Aligned organism(s): 85 entry(ies) | More info |
| Aligned organism(s): 85 entry(ies) | Help | Less info |
| 139-574, gnl|bosTau2|chr23 (454280-454724) | |
| 139-574, gnl|Hg17|chr17 (36915290-36914834) | |
| 139-574, gnl|Mm7|chr11 (100230496-100230064) | |
| 221-564, gnl|bosTau2|chr19 (33814812-33815167) | |
| 221-564, gnl|Hg17|chr17 (36232129-36231747) | |
| 221-564, gnl|Mm7|chr11 (99498164-99497788) | |
| 654-818, gnl|bosTau2|chr19 (33816409-33816573) | |
| 654-818, gnl|Hg17|chr17 (36230449-36230285) | |
| 654-818, gnl|Mm7|chr11 (99496697-99496533) | |
| 843-966, gnl|bosTau2|chr19 (33773670-33773793) | |
| 843-966, gnl|canFam2|chr9 (25155934-25155786) | |
| 843-966, gnl|danRer3|chr19 (1222935-1223081) | |
| 843-966, gnl|dasNov1|scaffold_21574 (57473-57621) | |
| 843-966, gnl|echTel1|scaffold_284268 (38287-38139) | |
| 843-966, gnl|fr1|chrUn (253380164-253380011) | |
| 843-966, gnl|galGal2|chr27_random (546926-546776) | |
| 843-966, gnl|hg17|chr17 (36273470-36273618) | |
| 843-966, gnl|Hg17|chr17 (36273614-36273491) | |
| 843-966, gnl|loxAfr1|scaffold_41873 (6025-5877) | |
| 843-966, gnl|mm7|chr11 (99527518-99527661) | |
| 843-966, gnl|Mm7|chr11 (99527657-99527534) | |
| 843-966, gnl|monDom2|scaffold_18 (50370986-50371134) | |
| 843-966, gnl|oryCun1|scaffold_173998 (4780-4928) | |
| 843-966, gnl|panTro1|chr19 (39523233-39523381) | |
| 843-966, gnl|rheMac2|chr16 (50979794-50979942) | |
| 843-966, gnl|rn3|chr10 (88338934-88339077) | |
| 843-966, gnl|tetNig1|chr18 (5133528-5133663) | |
| 843-966, gnl|xenTro1|scaffold_574 (165120-164979) | |
| 975-1102, gnl|bosTau2|chr23 (443357-443484) | |
| 975-1102, gnl|canFam2|chr9 (24572134-24571999) | |
| 975-1102, gnl|danRer3|chr19 (1205282-1205392) | |
| 975-1102, gnl|dasNov1|scaffold_67941 (6812-6677) | |
| 975-1102, gnl|echTel1|scaffold_294049 (1152-1269) | |
| 975-1102, gnl|fr1|chrUn (253380392-253380257) | |
| 975-1102, gnl|galGal2|chr27_random (547494-547359) | |
| 975-1102, gnl|hg17|chr17 (36925661-36925796) | |
| 975-1102, gnl|Hg17|chr17 (36925790-36925663) | |
| 975-1102, gnl|loxAfr1|scaffold_6398 (70572-70437) | |
| 975-1102, gnl|mm7|chr11 (100242426-100242561) | |
| 975-1102, gnl|Mm7|chr11 (100242555-100242428) | |
| 975-1102, gnl|monDom2|scaffold_18 (51573757-51573892) | |
| 975-1102, gnl|oryCun1|scaffold_210461 (4075-3940) | |
| 975-1102, gnl|panTro1|chr19 (40125870-40126005) | |
| 975-1102, gnl|rheMac2|chr16 (51607797-51607932) | |
| 975-1102, gnl|rn3|chr10 (89087664-89087799) | |
| 975-1102, gnl|tetNig1|chr18 (5127273-5127408) | |
| 975-1102, gnl|xenTro1|scaffold_394 (374833-374963) | |
| 1112-1324, gnl|bosTau2|chr19 (33589478-33589690) | |
| 1112-1324, gnl|canFam2|chr9 (25043319-25043073) | |
| 1112-1324, gnl|canFam2|chr9 (25043083-25043322) | |
| 1112-1324, gnl|danRer3|chr19 (1233618-1233851) | |
| 1112-1324, gnl|danRer3|chr19 (1222637-1222385) | |
| 1112-1324, gnl|dasNov1|scaffold_4155 (3265-3513) | |
| 1112-1324, gnl|dasNov1|scaffold_4155 (3501-3262) | |
| 1112-1324, gnl|echTel1|scaffold_158520 (2184-2403) | |
| 1112-1324, gnl|echTel1|scaffold_158520 (2403-2181) | |
| 1112-1324, gnl|fr1|chrUn (253380798-253380561) | |
| 1112-1324, gnl|fr1|chrUn (253380562-253380803) | |
| 1112-1324, gnl|galGal2|chr27_random (592256-592025) | |
| 1112-1324, gnl|galGal2|chr27_random (592026-592256) | |
| 1112-1324, gnl|hg17|chr17 (36388571-36388816) | |
| 1112-1324, gnl|Hg17|chr17 (36388793-36388581) | |
| 1112-1324, gnl|hg17|chr17_random (2581642-2581879) | |
| 1112-1324, gnl|loxAfr1|scaffold_72845 (29391-29643) | |
| 1112-1324, gnl|loxAfr1|scaffold_72845 (29627-29388) | |
| 1112-1324, gnl|mm7|chr11 (99647579-99647825) | |
| 1112-1324, gnl|mm7|chr11 (99647815-99647579) | |
| 1112-1324, gnl|Mm7|chr11 (99647801-99647589) | |
| 1112-1324, gnl|monDom2|scaffold_18 (50580761-50581002) | |
| 1112-1324, gnl|monDom2|scaffold_18 (50580995-50580761) | |
| 1112-1324, gnl|oryCun1|scaffold_206837 (110509-110755) | |
| 1112-1324, gnl|oryCun1|scaffold_206837 (110745-110508) | |
| 1112-1324, gnl|panTro1|chr19 (39638740-39638985) | |
| 1112-1324, gnl|panTro1|chr19 (39638976-39638739) | |
| 1112-1324, gnl|rheMac2|chr16 (51095515-51095760) | |
| 1112-1324, gnl|rheMac2|chr16 (51095751-51095514) | |
| 1112-1324, gnl|rn3|chr10 (88498548-88498794) | |
| 1112-1324, gnl|rn3|chr10 (88498784-88498548) | |
| 1112-1324, gnl|tetNig1|chr18 (5132907-5133137) | |
| 1112-1324, gnl|tetNig1|chr18 (5133136-5132907) | |
| 1112-1324, gnl|xenTro1|scaffold_394 (449456-449703) | |
| 1112-1324, gnl|xenTro1|scaffold_394 (373708-373471) | |
| 1348-1722, gnl|bosTau2|chr23 (445364-445745) | |
| 1348-1722, gnl|Hg17|chr17 (36923900-36923523) | |
| 1348-1722, gnl|Mm7|chr11 (100241176-100240801) |
| Aligned organism(s): 85 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 139-574, gnl|bosTau2|chr23 (454280-454724) | |
| 139-574, gnl|Hg17|chr17 (36915290-36914834) | |
| 139-574, gnl|Mm7|chr11 (100230496-100230064) | |
| 221-564, gnl|bosTau2|chr19 (33814812-33815167) | |
| 221-564, gnl|Hg17|chr17 (36232129-36231747) | |
| 221-564, gnl|Mm7|chr11 (99498164-99497788) | |
| 654-818, gnl|bosTau2|chr19 (33816409-33816573) | |
| 654-818, gnl|Hg17|chr17 (36230449-36230285) | |
| 654-818, gnl|Mm7|chr11 (99496697-99496533) | |
| 843-966, gnl|bosTau2|chr19 (33773670-33773793) | |
| 843-966, gnl|canFam2|chr9 (25155934-25155786) | |
| 843-966, gnl|danRer3|chr19 (1222935-1223081) | |
| 843-966, gnl|dasNov1|scaffold_21574 (57473-57621) | |
| 843-966, gnl|echTel1|scaffold_284268 (38287-38139) | |
| 843-966, gnl|fr1|chrUn (253380164-253380011) | |
| 843-966, gnl|galGal2|chr27_random (546926-546776) | |
| 843-966, gnl|hg17|chr17 (36273470-36273618) | |
| 843-966, gnl|Hg17|chr17 (36273614-36273491) | |
| 843-966, gnl|loxAfr1|scaffold_41873 (6025-5877) | |
| 843-966, gnl|mm7|chr11 (99527518-99527661) | |
| 843-966, gnl|Mm7|chr11 (99527657-99527534) | |
| 843-966, gnl|monDom2|scaffold_18 (50370986-50371134) | |
| 843-966, gnl|oryCun1|scaffold_173998 (4780-4928) | |
| 843-966, gnl|panTro1|chr19 (39523233-39523381) | |
| 843-966, gnl|rheMac2|chr16 (50979794-50979942) | |
| 843-966, gnl|rn3|chr10 (88338934-88339077) | |
| 843-966, gnl|tetNig1|chr18 (5133528-5133663) | |
| 843-966, gnl|xenTro1|scaffold_574 (165120-164979) | |
| 975-1102, gnl|bosTau2|chr23 (443357-443484) | |
| 975-1102, gnl|canFam2|chr9 (24572134-24571999) | |
| 975-1102, gnl|danRer3|chr19 (1205282-1205392) | |
| 975-1102, gnl|dasNov1|scaffold_67941 (6812-6677) | |
| 975-1102, gnl|echTel1|scaffold_294049 (1152-1269) | |
| 975-1102, gnl|fr1|chrUn (253380392-253380257) | |
| 975-1102, gnl|galGal2|chr27_random (547494-547359) | |
| 975-1102, gnl|hg17|chr17 (36925661-36925796) | |
| 975-1102, gnl|Hg17|chr17 (36925790-36925663) | |
| 975-1102, gnl|loxAfr1|scaffold_6398 (70572-70437) | |
| 975-1102, gnl|mm7|chr11 (100242426-100242561) | |
| 975-1102, gnl|Mm7|chr11 (100242555-100242428) | |
| 975-1102, gnl|monDom2|scaffold_18 (51573757-51573892) | |
| 975-1102, gnl|oryCun1|scaffold_210461 (4075-3940) | |
| 975-1102, gnl|panTro1|chr19 (40125870-40126005) | |
| 975-1102, gnl|rheMac2|chr16 (51607797-51607932) | |
| 975-1102, gnl|rn3|chr10 (89087664-89087799) | |
| 975-1102, gnl|tetNig1|chr18 (5127273-5127408) | |
| 975-1102, gnl|xenTro1|scaffold_394 (374833-374963) | |
| 1112-1324, gnl|bosTau2|chr19 (33589478-33589690) | |
| 1112-1324, gnl|canFam2|chr9 (25043319-25043073) | |
| 1112-1324, gnl|canFam2|chr9 (25043083-25043322) | |
| 1112-1324, gnl|danRer3|chr19 (1233618-1233851) | |
| 1112-1324, gnl|danRer3|chr19 (1222637-1222385) | |
| 1112-1324, gnl|dasNov1|scaffold_4155 (3265-3513) | |
| 1112-1324, gnl|dasNov1|scaffold_4155 (3501-3262) | |
| 1112-1324, gnl|echTel1|scaffold_158520 (2184-2403) | |
| 1112-1324, gnl|echTel1|scaffold_158520 (2403-2181) | |
| 1112-1324, gnl|fr1|chrUn (253380798-253380561) | |
| 1112-1324, gnl|fr1|chrUn (253380562-253380803) | |
| 1112-1324, gnl|galGal2|chr27_random (592256-592025) | |
| 1112-1324, gnl|galGal2|chr27_random (592026-592256) | |
| 1112-1324, gnl|hg17|chr17 (36388571-36388816) | |
| 1112-1324, gnl|Hg17|chr17 (36388793-36388581) | |
| 1112-1324, gnl|hg17|chr17_random (2581642-2581879) | |
| 1112-1324, gnl|loxAfr1|scaffold_72845 (29391-29643) | |
| 1112-1324, gnl|loxAfr1|scaffold_72845 (29627-29388) | |
| 1112-1324, gnl|mm7|chr11 (99647579-99647825) | |
| 1112-1324, gnl|mm7|chr11 (99647815-99647579) | |
| 1112-1324, gnl|Mm7|chr11 (99647801-99647589) | |
| 1112-1324, gnl|monDom2|scaffold_18 (50580761-50581002) | |
| 1112-1324, gnl|monDom2|scaffold_18 (50580995-50580761) | |
| 1112-1324, gnl|oryCun1|scaffold_206837 (110509-110755) | |
| 1112-1324, gnl|oryCun1|scaffold_206837 (110745-110508) | |
| 1112-1324, gnl|panTro1|chr19 (39638740-39638985) | |
| 1112-1324, gnl|panTro1|chr19 (39638976-39638739) | |
| 1112-1324, gnl|rheMac2|chr16 (51095515-51095760) | |
| 1112-1324, gnl|rheMac2|chr16 (51095751-51095514) | |
| 1112-1324, gnl|rn3|chr10 (88498548-88498794) | |
| 1112-1324, gnl|rn3|chr10 (88498784-88498548) | |
| 1112-1324, gnl|tetNig1|chr18 (5132907-5133137) | |
| 1112-1324, gnl|tetNig1|chr18 (5133136-5132907) | |
| 1112-1324, gnl|xenTro1|scaffold_394 (449456-449703) | |
| 1112-1324, gnl|xenTro1|scaffold_394 (373708-373471) | |
| 1348-1722, gnl|bosTau2|chr23 (445364-445745) | |
| 1348-1722, gnl|Hg17|chr17 (36923900-36923523) | |
| 1348-1722, gnl|Mm7|chr11 (100241176-100240801) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| eep (1.59333) | |
| nep (0.551775) | |
| nmm (0.265604) | |
| eru (0.240096) | |
| mcp (0.170648) | |
| eye (0.170503) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (1.59333) | |
| nep (0.551775) | |
| nmm (0.265604) | |
| eru (0.240096) | |
| mcp (0.170648) | |
| eye (0.170503) |