Non-Coding RNA Search

Ss1.1-rlin19_p1.5

Sequence:


               
               AGCCGTTATAGACGACCAAAATAAATAGAGCTATTTCATATCACAGAAAGTCCTTAAGTT
AAAAAATTGTCAGTTCTCCACTACTTGTTCTATAGATTTAATGTAATTCTAATCCACATT
CCAGCAATGTTTCTTTGGAACTTAACAAGTTTATTTTAAAATGTATATGAATAAGCAAAA
GGCTGAACATATATAACACATTTCTAAAGAAAAAGATCAAGTTGAAGAGCCCTGTTCTAC
TAGATGCTGAAACTTATTATGAAGCTCTGATAATAAATATAGTGTGGTGTTTAAATAGGA
GTAAACAAACAGATTAATTGTACAGAATAAAAAGTCCAGAAATATACTTATTCATAGATG
AAAATATGAAATAGAATGGAACTGGTATTGGAGGTCGATAAAGAAATGACAACCCAGCCC
AACACAGTATGCTAGGACAACTTCCTTATTTAAAAGAAGAAAACAATTATTGAAATATTA
CTTAATGAGAAAAGACAATTTGATATGTTTCGTAGGAAAATGTACCAGAATACTTTATGA
CTTTAGGGAAAGGAGAAGATATATCTGGAAAATTTAAACAAAGGGGCAGCAGCAGTCAAG
CTATTACTATCAGAAAAAGTAAACTTTAAGGGAGTGAATTCAAGTGGAGAAATGCTGTCA
TTTGACATAGAAAATGGTAAGGTTCATAATGAAGATAGAATTTAAACGTCAACATGCTTC
TTTCAATACTGAACAGATGAAGATAAAAACAATCTGATGAAAAGCTCAATAGTAAACTGT
ACTTCACAATCAGACCCATTTTTTACATTTTCACACCTCTGAAAGTAAGATATGTTTTGA
TGTAATTGTCATTGTCCACACATACCTGTTTTTAGTCACAAGTGTCTATATTTTTTCACT
TCATGTTATTATTGGTGCTATATATGTCCTGTATAGTTGCCTTTAATTTTTAAAGATTAT
ATTATTATTTGGCCTTGAAAAAAAATTATTGTAAATGCTAAAAATTGTTGAAATGAAACA
GTGATGTGGAACTTGATAACAGAGAAGTGAATATCCAGGTTTGGAGGAATGAATGCAATT
CCCAGTTTTCTTGCAAAGCAATGACCATGATTTACAGGACCTTAAGAAAGGCTGTATTTT
AAGGTTACCTATCACAAACCAACATCAAAACTTGCAGAAAAAGTGTCTGAGGCTTGGAAG
AAAATCCCAGAGACAATAGTACTATGTTTGCTCATGTTTGGTAATGTCCACATACCAAAG
TTCTTGCTGGCACAATAAATATTGTGATAAAAAATGAGCATTTTGGTTTTCAGCCCCATA
AGCACTTAAAAAAACCCAGATTCTTAATATGTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCGTTATAGACGACCAAAATAAATAGAGCTATTTCATATCACAGAAAGTCCTTAAGTT
AAAAAATTGTCAGTTCTCCACTACTTGTTCTATAGATTTAATGTAATTCTAATCCACATT
CCAGCAATGTTTCTTTGGAACTTAACAAGTTTATTTTAAAATGTATATGAATAAGCAAAA
GGCTGAACATATATAACACATTTCTAAAGAAAAAGATCAAGTTGAAGAGCCCTGTTCTAC
TAGATGCTGAAACTTATTATGAAGCTCTGATAATAAATATAGTGTGGTGTTTAAATAGGA
GTAAACAAACAGATTAATTGTACAGAATAAAAAGTCCAGAAATATACTTATTCATAGATG
AAAATATGAAATAGAATGGAACTGGTATTGGAGGTCGATAAAGAAATGACAACCCAGCCC
AACACAGTATGCTAGGACAACTTCCTTATTTAAAAGAAGAAAACAATTATTGAAATATTA
CTTAATGAGAAAAGACAATTTGATATGTTTCGTAGGAAAATGTACCAGAATACTTTATGA
CTTTAGGGAAAGGAGAAGATATATCTGGAAAATTTAAACAAAGGGGCAGCAGCAGTCAAG
CTATTACTATCAGAAAAAGTAAACTTTAAGGGAGTGAATTCAAGTGGAGAAATGCTGTCA
TTTGACATAGAAAATGGTAAGGTTCATAATGAAGATAGAATTTAAACGTCAACATGCTTC
TTTCAATACTGAACAGATGAAGATAAAAACAATCTGATGAAAAGCTCAATAGTAAACTGT
ACTTCACAATCAGACCCATTTTTTACATTTTCACACCTCTGAAAGTAAGATATGTTTTGA
TGTAATTGTCATTGTCCACACATACCTGTTTTTAGTCACAAGTGTCTATATTTTTTCACT
TCATGTTATTATTGGTGCTATATATGTCCTGTATAGTTGCCTTTAATTTTTAAAGATTAT
ATTATTATTTGGCCTTGAAAAAAAATTATTGTAAATGCTAAAAATTGTTGAAATGAAACA
GTGATGTGGAACTTGATAACAGAGAAGTGAATATCCAGGTTTGGAGGAATGAATGCAATT
CCCAGTTTTCTTGCAAAGCAATGACCATGATTTACAGGACCTTAAGAAAGGCTGTATTTT
AAGGTTACCTATCACAAACCAACATCAAAACTTGCAGAAAAAGTGTCTGAGGCTTGGAAG
AAAATCCCAGAGACAATAGTACTATGTTTGCTCATGTTTGGTAATGTCCACATACCAAAG
TTCTTGCTGGCACAATAAATATTGTGATAAAAAATGAGCATTTTGGTTTTCAGCCCCATA
AGCACTTAAAAAAACCCAGATTCTTAATATGTTTTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-464, gnl|bosTau2|chr4 (40279772-40279323)
               


               
               556-1355, gnl|bosTau2|chr4 (40276039-40275231)
               

               
               556-1355, gnl|Hg17|chr18 (59829467-59830316)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-464, gnl|bosTau2|chr4 (40279772-40279323)
               


               
               556-1355, gnl|bosTau2|chr4 (40276039-40275231)
               

               
               556-1355, gnl|Hg17|chr18 (59829467-59830316)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

	1-464, gnl\|bosTau2\|chr4 (40279772-40279323)

	556-1355, gnl\|bosTau2\|chr4 (40276039-40275231)
	556-1355, gnl\|Hg17\|chr18 (59829467-59830316)